Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00506 ATGATATCTCTCTTTCTCATTCGTTGTTATTTCTCTTCTTATTCTTCTTCTTCTTCCTTCACTGTCTCTTATTTTCTCTCCATATCCATGACTCCTTATTCAGCTCCTTCCTTACAACCTCAAACCCAAATCTTCATTTCTCCTAATAATCAGGATTGCCCTACCTTTTTTAACATATTTCATGCAAAACCCACACAAAATTATCAGCAGGATGAGACGATGGTACTGCATGATGGATCATCAAGCAATAATCTGAATTCAGGTGATCCAATTAGGAACAGAAATGAGGGTAATCTAGGCTGGTACAAAACGGAGGAGGAAGACACAAAACATAGTCACGGGTCTGGGAAATGGATGTCTTCAAAGATGAGGCTAATGAAGAAAATAACGAGTCCAACCTCTGACAGATTCAACCCTCGTAATAACACCACTAGGGTTTGTTCCGACTGTAACACGACCACTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCCAAGTCGCTCTGCAATGCCTGTGGAATTAGACAGAGAAAAGCAAGAAGGGCAATGGCTGAAGCTTCTTCAAATCCAATAAACTCAGTGTGTGCAAAGACAAGAGTGTACAACAAGGAGAAGAACAAGTACAAGAACAAGTACAAATCCACTACTACTACTACTGCTTCTTCTGCAGGTTCATCTGAAGGGGTGAGAAAGATTGAATGTTTCAAAGACTTTGCCATAAGCTTGAGCAGTAAAAAGTCTTGTTTCCAACAAGTGTTTCCACGAGATGAAGTAGCTGAGGCAGCGATGCTTCTGATGGAGTTATCTTGTGGTTTTCTCCACTCATAA 828 0.413 MISLFLIRCYFSSYSSSSSFTVSYFLSISMTPYSAPSLQPQTQIFISPNNQDCPTFFNIFHAKPTQNYQQDETMVLHDGSSSNNLNSGDPIRNRNEGNLGWYKTEEEDTKHSHGSGKWMSSKMRLMKKITSPTSDRFNPRNNTTRVCSDCNTTTTPLWRSGPKGPKSLCNACGIRQRKARRAMAEASSNPINSVCAKTRVYNKEKNKYKNKYKSTTTTTASSAGSSEGVRKIECFKDFAISLSSKKSCFQQVFPRDEVAEAAMLLMELSCGFLHS 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00506 275 CDD ZnF_GATA 146 183 IPR000679 GO:0006355|GO:0043565
Viun8g00506 275 ProSiteProfiles GATA-type zinc finger domain profile. 141 177 IPR000679 GO:0006355|GO:0043565
Viun8g00506 275 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 25 133 - -
Viun8g00506 275 ProSitePatterns GATA-type zinc finger domain. 147 172 IPR000679 GO:0006355|GO:0043565
Viun8g00506 275 Pfam GATA zinc finger 147 180 IPR000679 GO:0006355|GO:0043565
Viun8g00506 275 SMART GATA_3 141 192 IPR000679 GO:0006355|GO:0043565
Viun8g00506 275 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 139 185 - -
Viun8g00506 275 Gene3D - 145 183 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00506 Viun-Chr8 3650276 3652144 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00506 115 274 C2C2-Gata Transcription Factor Family AT4G26150 39.906 1.42e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun8g00506 GATA 1.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00506 - - vun:114193858 502.286