Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00505 ATGAAGAAAGTTAGCTTGGATCTTTTCACAAACGATGTGGTAGTCAAGGATGAGACGATGGTACTGCATGATGGATCATCAAGCAATAATCTGAATTCAGGTGATCCAATTAGGAACAGAAATGAGGGTAATCTAGGCTGGTACAAAACGGAGGAGGAAGACACAAAACATAGTCACGGGTCTGGGAAATGGATGTCTTCAAAGATGAGGCTAATGAAGAAAATAACGAGTCCAACCTCTGACAGATTCAACCCTCGTAATAACACCACTAGGGTTTGTTCCGACTGTAACACGACCACTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCCAAGTCGCTCTGCAATGCCTGTGGAATTAGACAGAGAAAAGCAAGAAGGGCAATGGCTGAAGCTTCTTCAAATCCAATAAACTCAGTGTGTGCAAAGACAAGAGTGTACAACAAGGAGAAGAACAAGTACAAGAACAAGTACAAATCCACTACTACTACTACTGCTTCTTCTGCAGGTTCATCTGAAGGGGTGAGAAAGATTGAATGTTTCAAAGACTTTGCCATAAGCTTGAGCAGTAAAAAGTCTTGTTTCCAACAAGTGTTTCCACGAGATGAAGTAGCTGAGGCAGCGATGCTTCTGATGGAGTTATCTTGTGGTTTTCTCCACTCATAA 666 0.4294 MKKVSLDLFTNDVVVKDETMVLHDGSSSNNLNSGDPIRNRNEGNLGWYKTEEEDTKHSHGSGKWMSSKMRLMKKITSPTSDRFNPRNNTTRVCSDCNTTTTPLWRSGPKGPKSLCNACGIRQRKARRAMAEASSNPINSVCAKTRVYNKEKNKYKNKYKSTTTTTASSAGSSEGVRKIECFKDFAISLSSKKSCFQQVFPRDEVAEAAMLLMELSCGFLHS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00505 221 ProSiteProfiles GATA-type zinc finger domain profile. 87 123 IPR000679 GO:0006355|GO:0043565
Viun8g00505 221 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 85 221 - -
Viun8g00505 221 CDD ZnF_GATA 92 129 IPR000679 GO:0006355|GO:0043565
Viun8g00505 221 Gene3D - 91 129 IPR013088 GO:0006355|GO:0008270
Viun8g00505 221 SMART GATA_3 87 138 IPR000679 GO:0006355|GO:0043565
Viun8g00505 221 Pfam GATA zinc finger 93 126 IPR000679 GO:0006355|GO:0043565
Viun8g00505 221 ProSitePatterns GATA-type zinc finger domain. 93 118 IPR000679 GO:0006355|GO:0043565
Viun8g00505 221 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 85 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00505 Viun-Chr8 3650276 3655842 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00505 61 220 C2C2-Gata Transcription Factor Family AT4G26150 39.906 3.34e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun8g00505 GATA 8.1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00505 - - vun:114193858 372.859