Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00504 ATGGTACTGCATGATGGATCATCAAGCAATAATCTGAATTCAGGTGATCCAATTAGGAACAGAAATGAGGGTAATCTAGGCTGGTACAAAACGGAGGAGGAAGACACAAAACATAGTCACGGGTCTGGGAAATGGATGTCTTCAAAGATGAGGCTAATGAAGAAAATAACGAGTCCAACCTCTGACAGATTCAACCCTCGTAATAACACCACTAGGGTTTGTTCCGACTGTAACACGACCACTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCCAAGTCGCTCTGCAATGCCTGTGGAATTAGACAGAGAAAAGCAAGAAGGGCAATGGCTGAAGCTTCTTCAAATCCAATAAACTCAGTGTGTGCAAAGACAAGAGTGTACAACAAGGAGAAGAACAAGTACAAGAACAAGTACAAATCCACTACTACTACTACTGCTTCTTCTGCAGGTTCATCTGAAGGGGTGAGAAAGATTGAATGTTTCAAAGACTTTGCCATAAGCTTGAGCAGTAAAAAGTCTTGTTTCCAACAAGTGTTTCCACGAGATGAAGTAGCTGAGGCAGCGATGCTTCTGATGGAGTTATCTTGTGGTTTTCTCCACTCATAA 609 0.4319 MVLHDGSSSNNLNSGDPIRNRNEGNLGWYKTEEEDTKHSHGSGKWMSSKMRLMKKITSPTSDRFNPRNNTTRVCSDCNTTTTPLWRSGPKGPKSLCNACGIRQRKARRAMAEASSNPINSVCAKTRVYNKEKNKYKNKYKSTTTTTASSAGSSEGVRKIECFKDFAISLSSKKSCFQQVFPRDEVAEAAMLLMELSCGFLHS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00504 202 Pfam GATA zinc finger 74 107 IPR000679 GO:0006355|GO:0043565
Viun8g00504 202 ProSiteProfiles GATA-type zinc finger domain profile. 68 104 IPR000679 GO:0006355|GO:0043565
Viun8g00504 202 MobiDBLite consensus disorder prediction 1 20 - -
Viun8g00504 202 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 66 112 - -
Viun8g00504 202 ProSitePatterns GATA-type zinc finger domain. 74 99 IPR000679 GO:0006355|GO:0043565
Viun8g00504 202 Gene3D - 72 110 IPR013088 GO:0006355|GO:0008270
Viun8g00504 202 SMART GATA_3 68 119 IPR000679 GO:0006355|GO:0043565
Viun8g00504 202 CDD ZnF_GATA 73 110 IPR000679 GO:0006355|GO:0043565
Viun8g00504 202 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 65 202 - -
Viun8g00504 202 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00504 Viun-Chr8 3650276 3655842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00504 42 201 C2C2-Gata Transcription Factor Family AT4G26150 39.906 1.96e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun8g00504 GATA 7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00504 - - vun:114193858 366.311