Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00488 ATGGAGAATAATATGTACAGTGCTTCACTGGACATTGGTGGCAGAAATTCTGCTGTCATAGAAGAAATTGCACAGCATTTAGCACCGAAGCCACTGATTCAATGCTACTCATTTGACCTCAATAACCAAAACCACATTATAAATGGAATTCCAGTTCTTGCTGCAGAACAAGGTGAACCTACAAGCGATGTCCATGTAGATGGTTGCTTCATAAACCCTGCTACAATTGCTGATTCCAATTCATTTGTCTCGGTACAAGGAAAGAGTATTGTAGGAGATGCCTCAAATCACATCAATAACAGTGCCATTCAAGAACATTTAGCTGGAGGAAGGACAATTGCTTCTGCTGCTTCACTTGCTGACAGAATAGGCCTTCAAGAAAATCTGCAGAGTTCAGCAGCTTTGCCTCATTCAATGAGTTCATTGGAGGCACTGGGACCATACATCTTCAATAATTGGCAAGATACTTCAAACCCTTTGGCTGCAACTTTTGGTGATCATGCCTATGATGAATTATCAAGTATTCAGAAGTGGAATGTGAACAAGTTTCTTAAAGCTCCAGAGGCCAATGGGACTGAGATCCAGGCCTATTCTTCCATAGGAAACCTTGTTCAAAATGGATGGACATCATCAAATGTTGCAAGCTTGGGAAATTTTGCCTATAATTCTTCTAATAGTAGTAAAGAGCTATCACTGAGTCTTTCAAGATCTCCTCCAACTACAGGTCAGTGCTCAGAGATGAGCTGCTCCAACGCATCTCGTAGCATGAATGGAACAAGTTCAGGGTTGGAGCAACCTTCCTGCAGCAGCAAGGAACTGTGTATGAGATTAGGTTCTAACAAACATGTCCAGTTTTCACCAGCAATATTGGGGTCCAGATATCTTGCTGGAGTTCAAGAGATATTTTCTCAGATTGCAAGATATTCATTTGAAAATGTAGAGCTGATGAATTACTCAGCTTCTGGTGTTAAAAAGTCAGCTTCAGCTTCCACACAAAAGAGAAGGGTGGCGAGTAATCAGAATGAAAATTCCATGTATGGAGCACATGCAGAAGAATCTCCATCAGAAAGACATGCAGCTGATTCAAACAAATCCCAACTTCTCATGCTTCTACAACTGGTGGACAATGGATATAGTCAGTGTCTGGATGAGGTTCATACTGTGGCATCTGCATTCCATGCTGCTACTGAGTTGGATCCACACATGCATGCACATTTTGCACTTCAAACTATCTCTCTCTTGTACAAGGACTTGAGAGAGAGGATTAGCAATTGTATTCTTGCCATGGGACCAGATTTTAACAGCTTGTGTTCAGAAGAGGAGAAGGAATGGTCTCTTGAAACTTCGTTCATTCAAAAGCAATGGGCTCTGCAGCAGTTGAAGAAAAAAGATCAGTTATGGAGACCCCAAAGGGGCTTGCCAGAGAGATCTGTCTCTGTTCTACGCGCTTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCGGAGAAGCACTTATTGGCAGTAAAAAGTGGGTTGACAAGAAGCCAGGTATCGAATTGGTTTATCAATGCACGTGTTCGGTTATGGAAGCCTATGATTGAAGAAATGTATGCTGAAATGAGCAGAAGAAAAGCTTGTAGAAATGAAGAGGGATTGGAGAGCAGTCACAGAAGCAGGATGAGCATGAACACTCAAATGTTGAATATCAATTGA 1701 0.4174 MENNMYSASLDIGGRNSAVIEEIAQHLAPKPLIQCYSFDLNNQNHIINGIPVLAAEQGEPTSDVHVDGCFINPATIADSNSFVSVQGKSIVGDASNHINNSAIQEHLAGGRTIASAASLADRIGLQENLQSSAALPHSMSSLEALGPYIFNNWQDTSNPLAATFGDHAYDELSSIQKWNVNKFLKAPEANGTEIQAYSSIGNLVQNGWTSSNVASLGNFAYNSSNSSKELSLSLSRSPPTTGQCSEMSCSNASRSMNGTSSGLEQPSCSSKELCMRLGSNKHVQFSPAILGSRYLAGVQEIFSQIARYSFENVELMNYSASGVKKSASASTQKRRVASNQNENSMYGAHAEESPSERHAADSNKSQLLMLLQLVDNGYSQCLDEVHTVASAFHAATELDPHMHAHFALQTISLLYKDLRERISNCILAMGPDFNSLCSEEEKEWSLETSFIQKQWALQQLKKKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMSRRKACRNEEGLESSHRSRMSMNTQMLNIN 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00488 566 Gene3D - 470 549 - -
Viun8g00488 566 CDD homeodomain 467 528 IPR001356 GO:0003677
Viun8g00488 566 MobiDBLite consensus disorder prediction 327 348 - -
Viun8g00488 566 Pfam Homeobox KN domain 484 523 IPR008422 GO:0003677|GO:0006355
Viun8g00488 566 SUPERFAMILY Homeodomain-like 469 536 IPR009057 -
Viun8g00488 566 SMART prehox3 283 424 IPR006563 -
Viun8g00488 566 MobiDBLite consensus disorder prediction 230 264 - -
Viun8g00488 566 SMART HOX_1 467 531 IPR001356 GO:0003677
Viun8g00488 566 Pfam Associated with HOX 289 423 IPR006563 -
Viun8g00488 566 MobiDBLite consensus disorder prediction 327 361 - -
Viun8g00488 566 ProSiteProfiles 'Homeobox' domain profile. 464 527 IPR001356 GO:0003677
Viun8g00488 566 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 235 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00488 Viun-Chr8 3523234 3526811 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00488 188 540 Homeobox Transcription Factor Family AT4G32980 50.136 4.16e-101 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Viun8g00488 POX 2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00488 - - gmx:100812648 920.228