Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00477 ATGGGTATCTGCATATCAGTTTCAGAGAAAGATGATGATGAGAATGTGACAATATTTGAAGAAAGGAAGAAGGTTCTTAACGAGAGTCAGAGACTCTTCTCTGTTTACTCCAAACAGGGTACCAAAGGACTCAACCAAGATGCTGCCTCTATTCACCAGGGTTATGGAACGGAAGATGGAACGTTTTGTGGTGTTTATGATGGTCATGGAGGGAATGGACACAGAGTGAGCAAAATAGTAAGCAGTCGTTTATCTTCCCTCATTCTGGACCAAAAGAATGTTCTTGAAAAGATTGATGCTATAAAAAATGGTTGTCACAACACCACCTCAAAAAACCATGTTGGCACAATGAAAGAGAACTCAGATGCAAACAACTTTCAGAAATGGAAAGAAGCAATTGTTAGTGCTTTCAAGGTGATGGAGAAAGAGTTCAAGCTTCAACATAATCTAGATTGCTCTGGCAGTGGAACCACTGCTGTTGTTATCATAAAACAGGGTGAAGGTCTTGTCATAGCAAATCTGGGTGATTCAAGAGCAGTGATGGGAACAATGTGTGAAGAAAAACTCGTAGCCACCCAATTGACCACAGATTTGAAGCCTGAATTACCTCGAGAAGCAGAAAGAATAAGAAGGTGCAATGGTTGTGTGTGTGCATCGAAGGAAGAACCAGAAATCCAGAGAGTGTGGATGCCTAACAACGATAACTCCCCTGGCCTAGCCATGTCTCGATCTTTTGGAGATTTCTTGCTCAAGGACTATGGTGTTATTGCTATCCCAGATATTTCTTACCACCCTCTAACATCAAGTGATCAATTTATTGTTCTTGCTAGTGATGGGGTGTGGGATGTACTAAGCAACAATGAGGTTGCATCAATTGTGTGGAGTGCAGAGAGTGAAAAGGTTGCAGCAAGAGCAGTAGTGGAAGCAGCCAGTGCTGCATGGAAAGACAAGTTTCCTTCATATATGGCAGATGACTGCACTGTGGTTTGTCTCTTCATGCACCAGAAACCACAACTTCAGTCATTTCAAAACTAA 1035 0.4193 MGICISVSEKDDDENVTIFEERKKVLNESQRLFSVYSKQGTKGLNQDAASIHQGYGTEDGTFCGVYDGHGGNGHRVSKIVSSRLSSLILDQKNVLEKIDAIKNGCHNTTSKNHVGTMKENSDANNFQKWKEAIVSAFKVMEKEFKLQHNLDCSGSGTTAVVIIKQGEGLVIANLGDSRAVMGTMCEEKLVATQLTTDLKPELPREAERIRRCNGCVCASKEEPEIQRVWMPNNDNSPGLAMSRSFGDFLLKDYGVIAIPDISYHPLTSSDQFIVLASDGVWDVLSNNEVASIVWSAESEKVAARAVVEAASAAWKDKFPSYMADDCTVVCLFMHQKPQLQSFQN 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00477 344 SMART PP2C_4 22 331 IPR001932 -
Viun8g00477 344 SUPERFAMILY PP2C-like 28 334 IPR036457 -
Viun8g00477 344 Gene3D - 13 335 IPR036457 -
Viun8g00477 344 PANTHER PROTEIN PHOSPHATASE 33 331 IPR015655 GO:0004722|GO:0006470
Viun8g00477 344 CDD PP2Cc 31 295 IPR001932 -
Viun8g00477 344 Pfam Protein phosphatase 2C 103 310 IPR001932 -
Viun8g00477 344 ProSiteProfiles PPM-type phosphatase domain profile. 32 333 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00477 Viun-Chr8 3486662 3489239 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00477 30 338 PP2C-type Phosphatase Gene Family AT5G26010 52.412 3.54e-99 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00477 - - gmx:100815312 551.977