Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00476 ATGCTTCAGCTTTCAGTTTCAGAGAAAGATGATGATGAGAATGTGACAATATTTGAAGAAAGGAAGAAGGTTCTTAACGAGAGTCAGAGACTCTTCTCTGTTTACTCCAAACAGGGTACCAAAGGACTCAACCAAGATGCTGCCTCTATTCACCAGGGTTATGGAACGGAAGATGGAACGTTTTGTGGTGTTTATGATGGTCATGGAGGGAATGGACACAGAGTGAGCAAAATAGTAAGCAGTCGTTTATCTTCCCTCATTCTGGACCAAAAGAATGTTCTTGAAAAGATTGATGCTATAAAAAATGGTTGTCACAACACCACCTCAAAAAACCATGTTGGCACAATGAAAGAGAACTCAGATGCAAACAACTTTCAGAAATGGAAAGAAGCAATTGTTAGTGCTTTCAAGGTGATGGAGAAAGAGTTCAAGCTTCAACATAATCTAGATTGCTCTGGCAGTGGAACCACTGCTGTTGTTATCATAAAACAGGGTGAAGGTCTTGTCATAGCAAATCTGGGTGATTCAAGAGCAGTGATGGGAACAATGTGTGAAGAAAAACTCGTAGCCACCCAATTGACCACAGATTTGAAGCCTGAATTACCTCGAGAAGCAGAAAGAATAAGAAGGTGCAATGGTTGTGTGTGTGCATCGAAGGAAGAACCAGAAATCCAGAGAGTGTGGATGCCTAACAACGATAACTCCCCTGGCCTAGCCATGTCTCGATCTTTTGGAGATTTCTTGCTCAAGGACTATGGTGTTATTGCTATCCCAGATATTTCTTACCACCCTCTAACATCAAGTGATCAATTTATTGTTCTTGCTAGTGATGGGGTGTGGGATGTACTAAGCAACAATGAGGTTGCATCAATTGTGTGGAGTGCAGAGAGTGAAAAGGTTGCAGCAAGAGCAGTAGTGGAAGCAGCCAGTGCTGCATGGAAAGACAAGTTTCCTTCATATATGGCAGATGACTGCACTGTGGTTTGTCTCTTCATGCACCAGAAACCACAACTTCAGTCATTTCAAAACTAA 1032 0.4196 MLQLSVSEKDDDENVTIFEERKKVLNESQRLFSVYSKQGTKGLNQDAASIHQGYGTEDGTFCGVYDGHGGNGHRVSKIVSSRLSSLILDQKNVLEKIDAIKNGCHNTTSKNHVGTMKENSDANNFQKWKEAIVSAFKVMEKEFKLQHNLDCSGSGTTAVVIIKQGEGLVIANLGDSRAVMGTMCEEKLVATQLTTDLKPELPREAERIRRCNGCVCASKEEPEIQRVWMPNNDNSPGLAMSRSFGDFLLKDYGVIAIPDISYHPLTSSDQFIVLASDGVWDVLSNNEVASIVWSAESEKVAARAVVEAASAAWKDKFPSYMADDCTVVCLFMHQKPQLQSFQN 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00476 343 CDD PP2Cc 30 294 IPR001932 -
Viun8g00476 343 PANTHER PROTEIN PHOSPHATASE 32 330 IPR015655 GO:0004722|GO:0006470
Viun8g00476 343 Pfam Protein phosphatase 2C 102 309 IPR001932 -
Viun8g00476 343 SUPERFAMILY PP2C-like 27 333 IPR036457 -
Viun8g00476 343 SMART PP2C_4 21 330 IPR001932 -
Viun8g00476 343 ProSiteProfiles PPM-type phosphatase domain profile. 31 332 IPR001932 -
Viun8g00476 343 Gene3D - 12 334 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00476 Viun-Chr8 3486662 3489430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00476 29 337 PP2C-type Phosphatase Gene Family AT5G26010 52.412 2.90e-99 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00476 - - gmx:100815312 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00476 8 3486662 3489430 Viun8g00476 8 3486662 3489430 ECH
Viun8g00476 8 3486662 3489430 Viun9g03313 9 39879257 39880974 PCT