Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00456 ATGGGAAGAGCCCCTTGCTGTGACAAAGCCAATGTCAAAAGAGGACCATGGTCCCCTGAAGAAGATGCAACACTCAAAGCCTATGTGGAGTCTCATGGAACTGGTGGAAATTGGATTGCATTGCCCAAAAAAGCTGGCCTTAGACGGTGTGGGAAGAGTTGCCGTCTACGGTGGCTGAATTATCTGAGACCAGACATCAAACATGGAGGCTTCACTGAAGAAGAAGACAACATCATTTGCAATCTCTATGGCCAGATGGGAAGCAGATGGTCTGCCATAGCCTCTAAGCTTCCTGGCAGAACCGACAATGATGTGAAAAACTACTGGAACACGAAACTGAAGAAGAAGATAATGGTGGCAGGAAAAGTTAGTCTCAAAACATTGACTGAAAATGACACTCTTCTTTCAACTTCAACCCCATTACCAACCAACCAAAAAAATTCACCTTTCAATGCTTCACTAAATCAGCTACCCTTGGTGCTACCGATCTTAGAAACAAATGATAGCAATGCATTCACCATTAATCAAAAAAACATCATTAGTTTTGACCAAACAAAGCATCATGGGTTGATGCATGGTATCTCACAAATTGGTGCAAGTTCAAGGTTCAAAAACAACACCAATGAAAGTAACAGTAACAGTCACATGGTTTCACTGTCTCAAGAAGGTTCAAGCAGCATTTCGGATTCATCTTCAATTGCAGTGAATTACAACAAGTGTGTTGTGTCACAGCCTCAACAACAAGAACAACATCAACAACAACATGTTATTGATGAATCTATGGAAATGTTGATGGATTTTGGCTTTGGATTTCCCTATGATTTTTCTAACTGCCATTATGAGAGAGTTGGTGAAACTTTTGCTCCAGAGTGGGTTGATTTTAGCTATGCTGACATTAAGCCACATTGA 909 0.4103 MGRAPCCDKANVKRGPWSPEEDATLKAYVESHGTGGNWIALPKKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICNLYGQMGSRWSAIASKLPGRTDNDVKNYWNTKLKKKIMVAGKVSLKTLTENDTLLSTSTPLPTNQKNSPFNASLNQLPLVLPILETNDSNAFTINQKNIISFDQTKHHGLMHGISQIGASSRFKNNTNESNSNSHMVSLSQEGSSSISDSSSIAVNYNKCVVSQPQQQEQHQQQHVIDESMEMLMDFGFGFPYDFSNCHYERVGETFAPEWVDFSYADIKPH 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00456 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Viun8g00456 302 CDD SANT 71 113 IPR001005 -
Viun8g00456 302 MobiDBLite consensus disorder prediction 203 223 - -
Viun8g00456 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Viun8g00456 302 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Viun8g00456 302 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Viun8g00456 302 Gene3D - 7 68 - -
Viun8g00456 302 SMART sant 13 64 IPR001005 -
Viun8g00456 302 SMART sant 67 115 IPR001005 -
Viun8g00456 302 FunFam Transcription factor RAX3 7 68 - -
Viun8g00456 302 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Viun8g00456 302 Gene3D - 70 134 - -
Viun8g00456 302 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Viun8g00456 302 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Viun8g00456 302 CDD SANT 16 62 IPR001005 -
Viun8g00456 302 PANTHER OS09G0431300 PROTEIN 1 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00456 Viun-Chr8 3347088 3349998 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00456 1 118 MYB Transcription Factor Family AT5G65790 83.051 5.48e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun8g00456 Myb_DNA-binding 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00456 K09422 - gmx:100789985 409.838