Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00450 ATGAGTTTTCATGAAACACCAAACATAGGACTTGGTCTTGGTCTTGGTCTTGGTCTTGGTCTTGTTACCTTCCATGATGAATCAGAGAACTGCATGAAGAGTGATGGCCACAACAAGATCAGAAGGGTGGAGAATCCATCAAACGGTAACAACACATACCCTTCACTTACTTTAGGACCACCAGAAGATGATGAACATGATCATGATCATGATCGTGATGAAGTGAAAAATGATCAACCAAGTTCAAAGACCGAGTCCTATGAATACTTTCGACCACAGGTTTCTTCTCCCAGTGTGGTTTCTTCGTTTTCCAACTCCTCTAGCATCAAGAGGGAGCGAGATCAGGCCATGGGAGAAGAATTTGATGTAGAAGTAGAGAAATTTCAGACAAGGGTAACAGATGCTGATGAAGATGGTAACCCCAGAAAGAAACTTAGACTCACCAAAGAACAATCAGCAATCTTGGAAGAAAACTTCAGAGAACATTCTACTCTCAATCCGAAGCAAAAGCAAGAATTGGCAATGAAGCTGAATCTGCGAACCAGACAAGTAGAGGTGTGGTTTCAGAACAGGAGAGCCAGGACGAAGCTAAAACAAACTGAGTCAGATTGTGATGTATTGAAGAAGTGTTGTGAGAGTCTGACAGAAGAAAACAAGAGGCTGCAAAAGGAGGTTCAAGAACTGAAGTCAATGCAAGCAATGGCAATGCCTCTTTACATGCAGATTCCAGCAGCCACACTTTCCCTGTGCCCTTCTTGTGAGAGAATTTCTGCTACTAAAAGTGAAGATGAAAATGCCAACAACACTACTTCTTCATTACTTTTTCCTTCAAAAACTCATCATCACCACTTTTACAAAAGTAACTATCCATTCTCTCACTCTTCATCTGCAGCATGCTAA 900 0.4156 MSFHETPNIGLGLGLGLGLGLVTFHDESENCMKSDGHNKIRRVENPSNGNNTYPSLTLGPPEDDEHDHDHDRDEVKNDQPSSKTESYEYFRPQVSSPSVVSSFSNSSSIKRERDQAMGEEFDVEVEKFQTRVTDADEDGNPRKKLRLTKEQSAILEENFREHSTLNPKQKQELAMKLNLRTRQVEVWFQNRRARTKLKQTESDCDVLKKCCESLTEENKRLQKEVQELKSMQAMAMPLYMQIPAATLSLCPSCERISATKSEDENANNTTSSLLFPSKTHHHHFYKSNYPFSHSSSAAC 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00450 299 SMART halz 198 242 IPR003106 GO:0006355|GO:0043565
Viun8g00450 299 MobiDBLite consensus disorder prediction 33 91 - -
Viun8g00450 299 SMART HOX_1 140 202 IPR001356 GO:0003677
Viun8g00450 299 ProSiteProfiles 'Homeobox' domain profile. 138 198 IPR001356 GO:0003677
Viun8g00450 299 Pfam Homeobox associated leucine zipper 198 231 IPR003106 GO:0006355|GO:0043565
Viun8g00450 299 SUPERFAMILY Homeodomain-like 139 206 IPR009057 -
Viun8g00450 299 Gene3D - 135 204 - -
Viun8g00450 299 MobiDBLite consensus disorder prediction 43 57 - -
Viun8g00450 299 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 15 273 - -
Viun8g00450 299 CDD homeodomain 141 199 IPR001356 GO:0003677
Viun8g00450 299 MobiDBLite consensus disorder prediction 60 81 - -
Viun8g00450 299 Pfam Homeodomain 142 196 IPR001356 GO:0003677
Viun8g00450 299 FunFam Homeobox-leucine zipper protein 18 126 203 - -
Viun8g00450 299 Coils Coil 197 234 - -
Viun8g00450 299 ProSitePatterns 'Homeobox' domain signature. 173 196 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00450 Viun-Chr8 3240055 3242075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00450 109 299 Homeobox Transcription Factor Family AT4G37790 53.659 2.72e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun8g00450 Homeodomain 3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00450 K09338 - gmx:100807072 414.075