Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00410 ATGTTGTGTGCTTGTTCCGGGGAGCAATTCAAGTTTGAAGAGGCACCACAGTCACCTGAGTCCTTGGCAACAAGGGATTTCTCTGCAAGTGGTCTTTCTTCAAGGACTGGGGATTGGGAATCCAAATTTGATGAGACGCAAGTGGAAGAAGCTGAATCTACTTTAAAAGAAACACTCTCATTAAACTATGAGGAAGCTCGGGCTTTGCTGGGGAGGCTTGAATACCAAAGAGGGAACTTTGATGCTGCCCTTCAAGTTTTTGAAGGCATAGACATAAAGACTTTGGCCCCGAGAATGATCAGGGCCATAGCCGAAAGAACCAAGCAAAGAAAACCACGGTCAAAGGTTGATAATGTGCTTCCAAATGTAATGTCAATGCATTCAGTAAGCCTGCTTCTAGAGGCAATTTTGCTTAAATCCAAATCCTTAGAAGAACTTGGAAGATACACCGAGGCTGCAAAAGAGTGCAGAATTATTGTGGACACAGTAGAATCTGCTCTTCCTAAAGGAATGCCTGAGGGTATTGGTGAAGATTGTAAGTTGCAGGAAATGTTCCACAAAGCATTGGAGTTGCTTCCAAATCTATGGATCAAGGCTAGTTTTCTAGACGAAGCTGTCACTGCTTATCGGAGGGCTCTGATCAAGCCATGGAATTTGGAGCCATGGAGATTGGCCAGGGTACAAAAAGATTTGGCTACCACACTTCTCTATGGTGGTGCTGAAGTAAACCTACCCTCTCAGCTGCAAGTGAATGATTTAACAACACCTATGAGTGGTACTGAAGAAGCCATACTTTTGCTGTTGATACTCTCAGAAAAGATGGAACTTCAGGAAATAGATTGGGACCCTGAAATAATGGATCATCTTACATTTTCACTTTCAGTTACTGGAATGTTTGAATCACTGGCAGATAGCGTAGAGAAGATTCTTCCAGGGGTTTATGATCGGGCAGAGAGGTGGCACTTTCTTGCTCTATGTTACAGTGCAGCAGGACAGAATGAAGTAGCCTTGAACCTTTTGAGGAAAGCTTGTGGTAGTTCTGAAGCTAAGCATAAACCCTATTTTCCTTCATTTTTGTTTGCTGCAAAGCTGTGTTCTTTATGTCCAAACCATGCTCATGAAGGCATTAAGTTTTCACAGAAAGTTATTGATCTAGCCAAGCATCAAAATGAGCATTTTCTGGGTGAGGGCCAAAAATTTCTGGGTATTTGCAAAGGGGCTGCTGCAAGAGTATCTGTTCTAGATTCTGAAAGAGTTATACTTCAGAGAGAGTCTTTGTACTTTCTAAATGATGCTGTGGATTCAAATGGAAATAATGATCCAGAAGTGATACTCAGCCTTGGATTGCAAAATGCAATCCAAAGAAATCTAAATGCAGCATATGACAATTTAATGATATACTCTGACATGATGGCTGGAAGCTCAAAAAGAGGTTGGCAGTTGTTAGCACTCATAGTATCAGCGCAACAGAGGTTTAAGGATGCAGAAACTATAGTTGATTTTGGTTTAGATGAGGCTGGAAGTATCGACCAGTTAGAACTACTGAGACTGAAAGCTATACTTCAAATTACACAGCAGCAACCTAAGAAAGCAGTAGAAACCTACAGAATCTTGCTAGCAGTAATTGAATCACAAAAGGAGCATTGGCTTCAGTCTAAGGCATTCAGGCATGAGGCATTAAAACAACAGAAGTTGGAAATGGAAGTGTGGCAAGATTTGGCTAGCATTTATGTAGATCTTTGCTCCTTTCTAGATGCAAAAGTATGTGTTGACAAGGCTCAGTTGATAGATTTTTTTTCTCCAAGAAGTTGGCATATTACTGGGTTGTTGTTTGAATCTCGAAAATTGCATAAGGAGGCCTTAGCTTCCTTCTCAGTCTCATTGTCAATAGAACCAGATCACATTCCCAGTATCATTTCAGCTGCAAAATTAATGCTTAAACTTGGCATGCAATCACTCCCAATCGCAAGAAGCTTTTTAATGAATGCTTTGAGATTAGATCCTACAAACCATGATGCATGGTTTAACCTTGGACTAGTTTCAAAAATGGAAGGTTCATTGCAACAAGCAGCAGATTGCTTTCAAGCCGCATATGAGCTGAAGCTTTCAGCTCCAGTGCAAAAATTTGAGTGA 2133 0.4102 MLCACSGEQFKFEEAPQSPESLATRDFSASGLSSRTGDWESKFDETQVEEAESTLKETLSLNYEEARALLGRLEYQRGNFDAALQVFEGIDIKTLAPRMIRAIAERTKQRKPRSKVDNVLPNVMSMHSVSLLLEAILLKSKSLEELGRYTEAAKECRIIVDTVESALPKGMPEGIGEDCKLQEMFHKALELLPNLWIKASFLDEAVTAYRRALIKPWNLEPWRLARVQKDLATTLLYGGAEVNLPSQLQVNDLTTPMSGTEEAILLLLILSEKMELQEIDWDPEIMDHLTFSLSVTGMFESLADSVEKILPGVYDRAERWHFLALCYSAAGQNEVALNLLRKACGSSEAKHKPYFPSFLFAAKLCSLCPNHAHEGIKFSQKVIDLAKHQNEHFLGEGQKFLGICKGAAARVSVLDSERVILQRESLYFLNDAVDSNGNNDPEVILSLGLQNAIQRNLNAAYDNLMIYSDMMAGSSKRGWQLLALIVSAQQRFKDAETIVDFGLDEAGSIDQLELLRLKAILQITQQQPKKAVETYRILLAVIESQKEHWLQSKAFRHEALKQQKLEMEVWQDLASIYVDLCSFLDAKVCVDKAQLIDFFSPRSWHITGLLFESRKLHKEALASFSVSLSIEPDHIPSIISAAKLMLKLGMQSLPIARSFLMNALRLDPTNHDAWFNLGLVSKMEGSLQQAADCFQAAYELKLSAPVQKFE 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00410 710 Gene3D Tetratricopeptide repeat domain 32 392 IPR011990 GO:0005515
Viun8g00410 710 Gene3D Tetratricopeptide repeat domain 422 706 IPR011990 GO:0005515
Viun8g00410 710 MobiDBLite consensus disorder prediction 14 41 - -
Viun8g00410 710 MobiDBLite consensus disorder prediction 21 37 - -
Viun8g00410 710 SMART tpr_5 671 704 IPR019734 GO:0005515
Viun8g00410 710 SMART tpr_5 512 545 IPR019734 GO:0005515
Viun8g00410 710 SMART tpr_5 317 350 IPR019734 GO:0005515
Viun8g00410 710 SMART tpr_5 601 634 IPR019734 GO:0005515
Viun8g00410 710 ProSiteProfiles TPR repeat profile. 671 704 IPR019734 GO:0005515
Viun8g00410 710 Pfam Tetratricopeptide repeat 46 89 - -
Viun8g00410 710 SUPERFAMILY TPR-like 424 597 IPR011990 GO:0005515
Viun8g00410 710 SUPERFAMILY TPR-like 569 701 IPR011990 GO:0005515
Viun8g00410 710 PANTHER PROTEIN NPG1 1 710 IPR043376 -
Viun8g00410 710 SUPERFAMILY TPR-like 48 354 IPR011990 GO:0005515
Viun8g00410 710 ProSiteProfiles TPR repeat profile. 601 634 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00410 Viun-Chr8 2805514 2809439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00410 1 709 Calmodulin-binding Proteins AT1G27460 58.766 0.0 841
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00410 K21843 - gmx:100799086 1231.08