Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00398 ATGAGTTGCAACGGTTGTCGAGTGCTGCGAAAAGGTTGCAGTGAGACATGTCCTCTGAGGTCGTGTCTGCAATGGATCGAATCCGCCGAATCGCAACGACACGCCACTCTCTTCCTTGCTAAGTTCTTTGGCCGCACCGACTTAATCTCCTTCATTGCTTCTGTTCCCCAAACCACAAGACCTGCATTGTTTCAGTCTCTGCTGTTTGAAGGGTGTGGGCGAACGGTAAATCCGGTGAACGGTGCCGTGGGACTTCTGTGCAGCGGAAATTGGCACGTGTGTGAGGCGGCGGTGGAGACGGTACTCGCCGGCGGCGTTCTTCGAGCGCCGCCGGATACAGTGGCCGGAGCTTCCACTGATACGCGCCGCCCTTTCCGGCCACTAAGATTGGAACATGATGCGAATGAGAACTCATCAAGAAGTTTGATGAACGGAGCAGAGGAACCGGAAACGGTGCGTTACGGTGGTCACAAGAAAAATCAGATCTTAAATTTGTTCATGTAA 504 0.5317 MSCNGCRVLRKGCSETCPLRSCLQWIESAESQRHATLFLAKFFGRTDLISFIASVPQTTRPALFQSLLFEGCGRTVNPVNGAVGLLCSGNWHVCEAAVETVLAGGVLRAPPDTVAGASTDTRRPFRPLRLEHDANENSSRSLMNGAEEPETVRYGGHKKNQILNLFM 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00398 167 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Viun8g00398 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 126 - -
Viun8g00398 167 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00398 Viun-Chr8 2691555 2693235 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00398 1 118 AS2 family AT4G37540 76.271 5.04e-61 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun8g00398 LOB 2.1e-22 No_clan