Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00397 ATGAGTTGCAACGGTTGTCGAGTGCTGCGAAAAGGTTGCAGTGAGACATGTCCTCTGAGGTCGTGTCTGCAATGGATCGAATCCGCCGAATCGCAACGACACGCCACTCTCTTCCTTGCTAAGTTCTTTGGCCGCACCGACTTAATCTCCTTCATTGCTTCTGTTCCCCAAACCACAAGACCTGGGTGTGGGCGAACGGTAAATCCGGTGAACGGTGCCGTGGGACTTCTGTGCAGCGGAAATTGGCACGTGTGTGAGGCGGCGGTGGAGACGGTACTCGCCGGCGGCGTTCTTCGAGCGCCGCCGGATACAGTGGCCGGAGCTTCCACTGATACGCGCCGCCCTTTCCGGCCACTAAGATTGGAACATGATGCGAATGAGAACTCATCAAGAAGTTTGATGAACGGAGCAGAGGAACCGGAAACGGTGCGTTACGGTGGTCACAAGAAAAATCAGATCTTAAATTTGTTCATGTAA 477 0.5388 MSCNGCRVLRKGCSETCPLRSCLQWIESAESQRHATLFLAKFFGRTDLISFIASVPQTTRPGCGRTVNPVNGAVGLLCSGNWHVCEAAVETVLAGGVLRAPPDTVAGASTDTRRPFRPLRLEHDANENSSRSLMNGAEEPETVRYGGHKKNQILNLFM 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00397 158 ProSiteProfiles LOB domain profile. 1 98 IPR004883 -
Viun8g00397 158 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 117 - -
Viun8g00397 158 Pfam Lateral organ boundaries (LOB) domain 2 92 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00397 Viun-Chr8 2691533 2693236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00397 1 109 AS2 family AT4G37540 68.644 2.39e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun8g00397 LOB 2.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00397 - - gmx:100796966 236.498