Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00358 ATGTTAGTCATGGAAGACAGGGAACACTGTTGTTCCAACGATTCAACCATCATCACCACCAACAGAAGAAGAAGGAGAAGCAGAAGCAGAAGCCCCACGACAACAACCTTGGAGAAATCGAAGAAGCAGCACCGCGAGAAACCGATGAAACCGTACCGAGGAATAAGGATGAGGAAGTGGGGAAAGTGGGTGGCGGAGATCAGAGAACCGAACAAGAGGTCAAGGATTTGGTTGGGTTCCTACACCACGCCCGTCGCCGCCGCACGCGCCTACGACACCGCCGTTTTCTACCTCCGAGGTCCCTCCGCCCGCCTCAATTTCCCCGAACTTTTGTTCCAGGACGAGGTCGACGGCGCCAACAACGATGACGATTCCGTGAACATGTCGGCTGATTCCATTCGCCGCAAAGCCACGCAAGTCGGCGCCAGAGTCGACGCGCTCCAAACCGCGCTTCACCATCACGCGCCCTCGCACAACCCCACTCCAATCTCTCTCAAACCCGACTTGAACGAGTTCCCAAAACTCGAAGACCTTCAAGATTGA 543 0.5525 MLVMEDREHCCSNDSTIITTNRRRRRSRSRSPTTTTLEKSKKQHREKPMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELLFQDEVDGANNDDDSVNMSADSIRRKATQVGARVDALQTALHHHAPSHNPTPISLKPDLNEFPKLEDLQD 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00358 180 CDD AP2 52 110 IPR001471 GO:0003700|GO:0006355
Viun8g00358 180 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Viun8g00358 180 Gene3D AP2/ERF domain 51 109 IPR036955 GO:0003700|GO:0006355
Viun8g00358 180 MobiDBLite consensus disorder prediction 31 45 - -
Viun8g00358 180 FunFam Ethylene-responsive transcription factor 2 50 109 - -
Viun8g00358 180 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Viun8g00358 180 PRINTS Ethylene responsive element binding protein signature 90 110 IPR001471 GO:0003700|GO:0006355
Viun8g00358 180 MobiDBLite consensus disorder prediction 21 48 - -
Viun8g00358 180 SUPERFAMILY DNA-binding domain 51 109 IPR016177 GO:0003677
Viun8g00358 180 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Viun8g00358 180 Pfam AP2 domain 52 100 IPR001471 GO:0003700|GO:0006355
Viun8g00358 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 31 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00358 Viun-Chr8 2328125 2329097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00358 45 159 AP2-EREBP Transcription Factor Family AT2G23340 66.957 2.14e-49 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun8g00358 AP2 3.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00358 K09286 - gmx:547642 260.381