Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00350 ATGGCTGGTGGTGACATGCACCAACCACAACCCTCTCATGGCAGAACCTTCCCTCCTAATTCAGAAGATTTCTCAACCTTCTTCAACCAACTCCTCCACAACCCTCCCACACTAGGAATGGACCCTAATCATTCTGCTTCTGATTTCACCCCAAACAACCTCAACAACAACAACAACAACATCCATGTTCCTTCCCCTCCCTCAACTTTTCATTTCTCTCACCCCCATCACTACATCCCTGCAACTGATGCCAACACCTTCAAACAACACAACCATAATCACAACCCTGATTTCACTTCTGCTGAGAGTGTGGAGGCAAGGAAACCTGTCCCACCACCACGTTCTTCGTCAAAGAGGAGTAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGAAGGAGTAGGATTAACGAGAAAATGAAAGCCTTGCAGAATTTAATTCCAAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCCATAGAATATTTAAAGCAGCTTCAACTTCAAGTGCAAATGTTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGTCTTTGCCAGGAGAACTAAGACCTGTGATGATGCCTCAGACTGGGTTGAACCTTGATGAGAATGATGGACTTCAGAATTCTACTAGTGCAATTGCATCATCTTCAAATGAAGAAAGCTTGGTTCGGCATGCTTTTAGTTTCCCAAAGCAATGCAGCATCTCAGATCAGTCCCTTGTTGTACCCTCAGTGACAAGATTAGCCACCTCGAATGCACCATCCACTTTTCAGCCTCCTATTAAGGATACAACACTCTACGACAACATGCCCCAACTCTTTATGGATGCACCAAAGATCGGAAAGGACCCTTCTTCAGACTTGTCTTGA 888 0.4392 MAGGDMHQPQPSHGRTFPPNSEDFSTFFNQLLHNPPTLGMDPNHSASDFTPNNLNNNNNNIHVPSPPSTFHFSHPHHYIPATDANTFKQHNHNHNPDFTSAESVEARKPVPPPRSSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMSLPGELRPVMMPQTGLNLDENDGLQNSTSAIASSSNEESLVRHAFSFPKQCSISDQSLVVPSVTRLATSNAPSTFQPPIKDTTLYDNMPQLFMDAPKIGKDPSSDLS 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00350 295 MobiDBLite consensus disorder prediction 1 133 - -
Viun8g00350 295 Gene3D - 116 180 IPR036638 GO:0046983
Viun8g00350 295 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 170 IPR011598 GO:0046983
Viun8g00350 295 CDD bHLH_AtPIF_like 121 183 IPR047265 -
Viun8g00350 295 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 14 265 IPR031066 -
Viun8g00350 295 MobiDBLite consensus disorder prediction 13 33 - -
Viun8g00350 295 MobiDBLite consensus disorder prediction 40 67 - -
Viun8g00350 295 Pfam Helix-loop-helix DNA-binding domain 125 171 IPR011598 GO:0046983
Viun8g00350 295 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 181 IPR036638 GO:0046983
Viun8g00350 295 MobiDBLite consensus disorder prediction 84 100 - -
Viun8g00350 295 MobiDBLite consensus disorder prediction 119 133 - -
Viun8g00350 295 FunFam Basic helix-loop-helix transcription factor 116 179 - -
Viun8g00350 295 SMART finulus 127 176 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00350 Viun-Chr8 2221728 2225545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00350 120 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 69.369 5.05e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun8g00350 HLH 2.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00350 - - gmx:100785332 392.889