Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00333 ATGTCTCCATTTCAGTTATTGTTGGTACTAGCAGTACTGCTTCTGTGCGTGTGGTCAGAGGCTGTTGCTAACGCAAATGATGATGAGATAAAAAGGAGCAACATAGACGAGTGCTCCATGTTGAAGTTCAAGATTGTTGTGAACATTGGAGCAGCCATAGAGTTGAATTCTCGAGTGGGAAAGGAACAGAAGATAGCAATGGAAGTTGCAATTGAAGATGTGAATCGACAAAGCTGCTACGAGCTTGCCTTGAACTACAGTTATAACATTCATCGCAACCCATCATCTCCCACTATGTTCGCTGCGGATCTTGCAAACAGCAAACAAGTGCAAGTTGTCGTAGGAACAAAACTCGATGTAGCAACGATGTTCCTCTCCATGGATGAAAACTCAAAGGATGTTCCTATCATATCTCTAACCTCAACAGCTACTCCAGAAATAGCTTCAATCCCATTGCCACACTTCATCCAAATGGGCCATGATGTCACCCTCCACATGCACTGCACCGCATCCATCATACACCAATTCCATTGGCGAAAGGTCAATGCTGAAATCGATCACCATGTAGCTTTTCCTTCAATGGCCCTTCTCTCAAACCCAACCGAGATCATAGAACAAGAGCTTACAAGGCTCAAGAGCAAGAGCAACAGGGTGTTCTTGCTTATTCAATCTTCCTTGGAGTTTGCCACTTTGCTTTTTGAGAAAGCAAAGGAAATGGGGATGATGGAAAAAGGGTCAGTGTGGATCATTGCAGATGATGTAGCCAACCACCTTGATTCCCTCGATTCTTCTGTCACTTCCAACATGCAAGGTGTCATGGGGTGCAAAACCAACTTCATGGAAGAGAGTGAAAGGTTCAAACGTTTCAAGTTCATGTTTAGGAGAAAGTTTGCACTGGAATACCCTGAGGAAGAAAGATTGCATCCGAGTGTGTTTTCTCTTAGGGCTTATGATGCTGTTTGGACCATTGCCAAAGCCTTGGAGAGCTCACAAGGAAACTTTTCCTTATCAGAAAGTATTTTGCACAGTGATCACGAGGGTCTTAGTGGGAAGATAAGGTTCAAAGGCAGAATGTTATCGGAACCACCAACGTTTAAGATTGTAAATGTTGTTGGAAAAGGTTACAAAGAGTTAGCATATTGGTCAATGGAGTCTGGTTTGAGTGAGAGCCTTGTTGAGCATAGTGCTGGTTCTGCTAGAATGCTTTTGAGTTCTGTGGATTGGCCTGGTGGGTTGAAAACAGTTCCAAAAGGTTGGGTGTACAATAGCAGTGAAGGGAAGCCTTTGAAAATTGGGGTTCCTGCTGTTGATCCATGTCCTCAGTTTGTGAATGTGAGCCATGATAAGAGACTGAATGAAACTCAATTCAGTGGTTTCTCAATCAATGTGTTTGAATCAGTTGTGCAACGTCTGCCTTATCACCTGCCTTTTGTTTTTGTGCCATTTTATGGCTCTTACGATCAGATAGTTGAACAAGTGAACAATAAGTACCTTGATGCTGCTGTGGGGGATATACAAGTGGTGGAACATAGATATGCATTTGCTGAATTCAGTCATCCATATGTTGAATCTGGCATAGCCATGGTGGTGAAAGTAAAGCCAGATAGATCCAAAGAAACTTGGATGTTCATGGACGCTTTCACAAAAGAAATGTGGATGCTAATGGCAGCAATGCATCTGTTCATAGCATTTGTAATCTGGTGCATTGAAGGTGAAAACAATTCGGAGTTGAAGAGTTTAGGGGCCATTCTCTGGTTTTCTGTCACCACGTTATTCTTCATACACAGAGAGCCTGTGAATAGCAGCTTGGCCAGAGTAGTGCTAGCACCTTGGTTATTTGCTATTCTGATAGTGACTCAAAGTTTTACTGCGAGCCTTTCATCCATGATGACAGTGTCCCATCTTGAACCAGCTGTGCCTGATATACAAACACTGCTGAAGACAAATGCAATCATAGGATGCAACAAGAACACTTTCTTGGTCCATTACTTAGTTGATGAACTCAAATTCCAGCCACAGAATATCAGGGTCTTTGACTCCATCCATGATTTCCCAAGAGCCTTTGAGAACAAAGAAATTGTGGCTTCTTTCACCATTGCCCCTCATGCTGATGTCTTCCTAGCCACCTATTGCAAGGGCTACATCAAAGCAGGACCTACCTTGAAGCTTGGTGGATTAGGCTTTGCATTTCCAAAAGGTTCAAGTTTGGCAATTGACATATCTCGAGCAACCTTAAAGGCCATAGAAAGTGGAGAAGTGCAAAAACTAGAAGAGAAAATGTTGTCTACAACTAATTGTGGATCCACAAACAACAACATACAAAACGAACAACTTGGTCCTCAACCTTTCTTTGGCTTGTTTGGCATTTGTGGAACCATTGCTGTCATAGGTTTATTGGCAACCATTGTTCACTTTGTTAAAAGAAAAGCACAAACATTTATGAACTACATATTATTGTCACAGTTACAAAGAGGAGTGCAGATAATCAAACTTTTTGGTCAAAAGCATCCATACAAGTACAGAAGGAGTGCACCTTCCCAAGATGCAAATAGCAGAGACAATGAGCTAGCTACACCAAGCATTAAGTTAACAATTAACTGCCACACCACTCATCAACTATAA 2622 0.4211 MSPFQLLLVLAVLLLCVWSEAVANANDDEIKRSNIDECSMLKFKIVVNIGAAIELNSRVGKEQKIAMEVAIEDVNRQSCYELALNYSYNIHRNPSSPTMFAADLANSKQVQVVVGTKLDVATMFLSMDENSKDVPIISLTSTATPEIASIPLPHFIQMGHDVTLHMHCTASIIHQFHWRKVNAEIDHHVAFPSMALLSNPTEIIEQELTRLKSKSNRVFLLIQSSLEFATLLFEKAKEMGMMEKGSVWIIADDVANHLDSLDSSVTSNMQGVMGCKTNFMEESERFKRFKFMFRRKFALEYPEEERLHPSVFSLRAYDAVWTIAKALESSQGNFSLSESILHSDHEGLSGKIRFKGRMLSEPPTFKIVNVVGKGYKELAYWSMESGLSESLVEHSAGSARMLLSSVDWPGGLKTVPKGWVYNSSEGKPLKIGVPAVDPCPQFVNVSHDKRLNETQFSGFSINVFESVVQRLPYHLPFVFVPFYGSYDQIVEQVNNKYLDAAVGDIQVVEHRYAFAEFSHPYVESGIAMVVKVKPDRSKETWMFMDAFTKEMWMLMAAMHLFIAFVIWCIEGENNSELKSLGAILWFSVTTLFFIHREPVNSSLARVVLAPWLFAILIVTQSFTASLSSMMTVSHLEPAVPDIQTLLKTNAIIGCNKNTFLVHYLVDELKFQPQNIRVFDSIHDFPRAFENKEIVASFTIAPHADVFLATYCKGYIKAGPTLKLGGLGFAFPKGSSLAIDISRATLKAIESGEVQKLEEKMLSTTNCGSTNNNIQNEQLGPQPFFGLFGICGTIAVIGLLATIVHFVKRKAQTFMNYILLSQLQRGVQIIKLFGQKHPYKYRRSAPSQDANSRDNELATPSIKLTINCHTTHQL 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00333 873 SUPERFAMILY Periplasmic binding protein-like II 408 759 - -
Viun8g00333 873 SUPERFAMILY Periplasmic binding protein-like I 46 419 IPR028082 -
Viun8g00333 873 SMART GluR_14 430 763 IPR001320 GO:0015276|GO:0016020
Viun8g00333 873 PIRSF IGluLR_plant 2 337 IPR017103 -
Viun8g00333 873 PIRSF IGluLR_plant 327 862 IPR017103 -
Viun8g00333 873 Gene3D - 650 724 - -
Viun8g00333 873 Gene3D - 725 759 - -
Viun8g00333 873 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 47 834 IPR015683 -
Viun8g00333 873 Gene3D - 187 308 - -
Viun8g00333 873 Pfam Ligand-gated ion channel 761 791 IPR001320 GO:0015276|GO:0016020
Viun8g00333 873 CDD GluR_Plant 427 761 - -
Viun8g00333 873 Pfam Receptor family ligand binding region 64 181 IPR001828 -
Viun8g00333 873 Pfam Receptor family ligand binding region 198 371 IPR001828 -
Viun8g00333 873 Gene3D - 44 186 - -
Viun8g00333 873 FunFam Glutamate receptor 540 673 - -
Viun8g00333 873 Pfam Bacterial extracellular solute-binding proteins, family 3 453 760 IPR001638 -
Viun8g00333 873 Gene3D - 312 425 - -
Viun8g00333 873 Gene3D - 426 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00333 Viun-Chr8 2140047 2145232 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00333 46 807 Ion Channels AT2G17260 29.727 5.04e-112 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00333 - - vra:106763764 1609.73