Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00291 ATGCATCAGTCCAACGGTTCCGATTCCTCGTTGCAGTCGCAGTCGCAGTCGCAGTCGCAGTCGCAGTCGCAGTCGCAGTCGACGGAACAGAATGTTCCGCGGCAGCCGGCGGGGTCTCCGGCGATGGCGCGGCCGCAGCAGTGGCTCCCGTTGCAGTATCCAGCGGCCGTGGTAATGCCGCACCACATGCTGCCTCCGCAGCACTACGCGCCGCCGCCGTACATGTCTTTCCATCACCACCAGTACGCGCCGCCGCACGTCCCGCACCAGCAGCATCAGAACGGATCCAGCGGCGAGAACAAAACCGTCTGGATCGGCGATTTGCATCACTGGATGGACGAGAACTATGTCCATCGCTGTTTCGCCTCCACCGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAGCAAACTGGCCTATCAGAGGGTTACGGATTTGTGGAGTTCTATTCACGTGCTACTGCTGAGAAAGTTTTGCAAAACTATTCTGGAATTGCGATGCCCAATACAGAGCAAGCATTCCGTCTAAACTGGGCGTCATTTAGCACAGGAGACAAGGGTTCAGATAATGTTCCTGACCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAGTTTGTTGCATGAAACTTTTGCTAGTGTGTTTCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGCTATGGTTTCGTCAGGTTCGGCGATGACAATGAAAGATCCCAGGCCATGACTCAGATGAATGGTGTTTACTGTTCCAGCAGGCCTATGCGCATTGGTGCTGCAACTCCAAGGAAATCATCTGGTCATCAACAGGGAGGTCAGTCAAATGGCACATCCAGCCAATCTGAAGCAGATTCTACCAACACAACAATATTTGTTGGAGGACTCGACCCTAATGTTTCAGATGAGGACCTCAGGCAGCCATTCTCCCAGTACGGTGAGATAGTCTCTGTAAAGATACCTGTTGGAAAGGGATGTGGTTTTGTCCAGTTTGCAAATAGAAATAATGCTGAAGAGGCATTGGAGAAGCTAAACGGGACAACAATTGGAAAGCAGACGGTCCGACTTTCTTGGGGCCGTAATCCAGCAAATAAGCAGTTTAGAATGGATTTCGGCAACCCCTGGACAGGGGCATATTATGGGGCCCCTATTTATGATGGTTATGGATACGCATTGCCTCCTCGTCATGATCCCAGCATATATGCTGCTGCTTATGGGGCTTACCCTCTTTATGGTGCCCACCAGCAACAAGTAAGCTGA 1290 0.5054 MHQSNGSDSSLQSQSQSQSQSQSQSQSTEQNVPRQPAGSPAMARPQQWLPLQYPAAVVMPHHMLPPQHYAPPPYMSFHHHQYAPPHVPHQQHQNGSSGENKTVWIGDLHHWMDENYVHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSRATAEKVLQNYSGIAMPNTEQAFRLNWASFSTGDKGSDNVPDLSIFVGDLAADVTDSLLHETFASVFPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGGQSNGTSSQSEADSTNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALEKLNGTTIGKQTVRLSWGRNPANKQFRMDFGNPWTGAYYGAPIYDGYGYALPPRHDPSIYAAAYGAYPLYGAHQQQVS 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00291 429 MobiDBLite consensus disorder prediction 274 305 - -
Viun8g00291 429 FunFam Polyadenylate-binding protein RBP47 284 401 - -
Viun8g00291 429 Gene3D - 276 377 IPR012677 -
Viun8g00291 429 MobiDBLite consensus disorder prediction 269 307 - -
Viun8g00291 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 273 IPR000504 GO:0003723
Viun8g00291 429 FunFam Polyadenylate-binding protein RBP47C isoform A 193 269 - -
Viun8g00291 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 301 364 IPR000504 GO:0003723
Viun8g00291 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 265 IPR000504 GO:0003723
Viun8g00291 429 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 170 IPR000504 GO:0003723
Viun8g00291 429 CDD RRM3_NGR1_NAM8_like 298 369 - -
Viun8g00291 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 181 IPR000504 GO:0003723
Viun8g00291 429 SUPERFAMILY RNA-binding domain, RBD 176 288 IPR035979 GO:0003676
Viun8g00291 429 Gene3D - 100 180 IPR012677 -
Viun8g00291 429 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 299 371 IPR000504 GO:0003723
Viun8g00291 429 FunFam Polyadenylate-binding protein RBP47B 100 180 - -
Viun8g00291 429 Gene3D - 193 269 IPR012677 -
Viun8g00291 429 SUPERFAMILY RNA-binding domain, RBD 288 399 IPR035979 GO:0003676
Viun8g00291 429 MobiDBLite consensus disorder prediction 75 101 - -
Viun8g00291 429 CDD RRM2_SECp43_like 193 272 - -
Viun8g00291 429 CDD RRM1_SECp43_like 102 182 - -
Viun8g00291 429 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 91 375 - -
Viun8g00291 429 MobiDBLite consensus disorder prediction 1 43 - -
Viun8g00291 429 SMART rrm1_1 102 177 IPR000504 GO:0003723
Viun8g00291 429 SMART rrm1_1 195 269 IPR000504 GO:0003723
Viun8g00291 429 SMART rrm1_1 300 367 IPR000504 GO:0003723
Viun8g00291 429 MobiDBLite consensus disorder prediction 87 101 - -
Viun8g00291 429 MobiDBLite consensus disorder prediction 1 35 - -
Viun8g00291 429 SUPERFAMILY RNA-binding domain, RBD 63 179 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00291 Viun-Chr8 1862924 1867474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00291 103 379 Eukaryotic Initiation Factors Gene Family AT4G34110 26.950 8.12e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00291 - - gmx:100819523 751.895