LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun8g00279	ATGCCTCTCTCCAGAAAATCGCTTTCCGCCGGAGCCCACCCCAACGACGCCGGACCCGATGCTCCGCCGCGCCGCTTGACCAGGCAGAGGAAGCTCCGCCACCTCAGCGACCATGACATTGGCTTCTCCTTCTTCCCCTCCGCCGACTCTTCTTCGTCTTTTTCTGCCTCGCCGGAGCCCCGCCACCACTGCGCTTCCGACCACCGCTCCCTCTCTAGTCTGCCGCACCCGCTGCCTCTTCCTGAAGCGCCGTTGACCCGTCGTGCCAAGTCAGTCAGCTCTGGTTCCGTACATCCTCCCCTCTATGCTTCCTTAGAACATCCCGGTTTCTCTTCTTCCGGGAAGGCATTGCCTCATGATGCATTGACACGTACAAAACCTACACTCCATTTGGACTCTACTCATGCAAATGCAAAATACAATCTGAGAGAGCATATTCCTGCAGCAAGTTTCTTGACAGGCCATAGTTCATTGAAAAACCGAAGAGCAGTGTCTCATGGAAATGACTCTGAAGTTAATCCCCATTTGAATTTGGGTGTTGCTGCCAAGCCCAAGAGTGCTCCAACAAGTGTGGTCAATAGTCCTGATACTAGTCCATATAGATCAAATAATATAGACTTCTTTGATCCTACCTTCAACTTCTATTCAGAAGTCAATGACAAATTGAAAATGTTATCAGCTAGAAGTGTACATAGTCCAGATCATTCCCCTATTCATTGCCCTCTAAGCCTCACTCGTTACTTCAATCCTAAAATTGAGGAGGGATCTCAGAACCATAAATTTTTTTCCAAGGTTTGCCCTGAAAATAACCATGTTGATGCACATCCCTTGCCTCTTCCTCCTAGAGCTTCATCTCCTGCACAATTATCTGTGCTGCATCAATCAAATGCCATCCATCATGCTACTGAAAATATGCCTTCAGTCAAAGGCCAATGGCAGAAAGGAAAACTTATTGGACGAGGAACCTTTGGAAGTGTTTTTCATGCAACCAACCTGGAAACTGGAGCCTCGTGTGCAATGAAGGAGGTCAATTTAATTCCGGATGATCCTACGTCTGCTGAGTGCATGAAACAACTGGACCAGGAAATCAAAATTCTTCATCAACTAAACCACCCCAACATTGTGCGGTATTACGGAAGTGAAATAGTTGGCAATCATTTGTACATATATATGGAATATGTCCATCCAGGATCAATCAGTAAATTTATGCGTGAGCATTGTGGAGCTATGACAGAATCTGTAGTTCGCAATTTTACAAGGCATATTCTCTCTGGTTTAGCTTACTTACACAGTAACAAAACCATCCACAGAGATATTAAAGGTGCAAACTTGCTGGTCAATCAATCCGGCATTGTGAAACTTGCAGATTTTGGGCTAGCGAAAATTCTGATGGGGAATTCATATGATCTTTCTTTAAAGGGTAGTCCTTACTGGATGGCTCCAGAGGTCGTGAAAGGTGCCATAAAGAACGAATCTAATCTTGATGTTGTCACGGGAATTGACATATGGAGCTTAGGGTGCACCATTATAGAGATGTTTACAGGAAAACCTCCTTGGAGTGAAGCTGAATGGGCTTCAGCCATGTTCAAGGCACTGCAAGAGTCCCCTCCCATACCTGAAACTTTATCATCAGTGGGAAAGGATTTCCTCCAAAAATGTTTCCAAAGGGACCCTGCAGATCGACCATCTTCATCAACCCTTCTTAAGCATGCATTTGTGCAGAATTTGCATGATCAAGATGTTCTAGGTCATCCACAATCCTTTCCTAGAGGAGACCTTGGACCAGGAGGTAATTCAGCTAGTCCTAGAGACACCACCACCACCAGAAGTGGCACAATGCAAGCCTCCATTATTAGCTCACGGTGTTTTAACAAGACTCAGAAACTACTGGGCGATACATCGGAACATAACAATGACAAGGAGTGTAATCATGTTATACCTTGTAGTCACTCTCATGTTCCAGAAGTGAACATTCTTCAATCTTCATTGAAACCTGGTACCCTCAATTACATGTCTGCTGAAAATTCCAGAAACATTTCCACCATGATGAGAATGATCACAAACTTCTGA	2070	0.4502	MPLSRKSLSAGAHPNDAGPDAPPRRLTRQRKLRHLSDHDIGFSFFPSADSSSSFSASPEPRHHCASDHRSLSSLPHPLPLPEAPLTRRAKSVSSGSVHPPLYASLEHPGFSSSGKALPHDALTRTKPTLHLDSTHANAKYNLREHIPAASFLTGHSSLKNRRAVSHGNDSEVNPHLNLGVAAKPKSAPTSVVNSPDTSPYRSNNIDFFDPTFNFYSEVNDKLKMLSARSVHSPDHSPIHCPLSLTRYFNPKIEEGSQNHKFFSKVCPENNHVDAHPLPLPPRASSPAQLSVLHQSNAIHHATENMPSVKGQWQKGKLIGRGTFGSVFHATNLETGASCAMKEVNLIPDDPTSAECMKQLDQEIKILHQLNHPNIVRYYGSEIVGNHLYIYMEYVHPGSISKFMREHCGAMTESVVRNFTRHILSGLAYLHSNKTIHRDIKGANLLVNQSGIVKLADFGLAKILMGNSYDLSLKGSPYWMAPEVVKGAIKNESNLDVVTGIDIWSLGCTIIEMFTGKPPWSEAEWASAMFKALQESPPIPETLSSVGKDFLQKCFQRDPADRPSSSTLLKHAFVQNLHDQDVLGHPQSFPRGDLGPGGNSASPRDTTTTRSGTMQASIISSRCFNKTQKLLGDTSEHNNDKECNHVIPCSHSHVPEVNILQSSLKPGTLNYMSAENSRNISTMMRMITNF	689

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun8g00279	689	ProSitePatterns	Protein kinases ATP-binding region signature.	318	341	IPR017441	GO:0005524
	Viun8g00279	689	MobiDBLite	consensus disorder prediction	1	33	-	-
	Viun8g00279	689	PRINTS	Tyrosine kinase catalytic domain signature	500	522	IPR001245	GO:0004672\|GO:0006468
	Viun8g00279	689	PRINTS	Tyrosine kinase catalytic domain signature	428	446	IPR001245	GO:0004672\|GO:0006468
	Viun8g00279	689	PRINTS	Tyrosine kinase catalytic domain signature	391	404	IPR001245	GO:0004672\|GO:0006468
	Viun8g00279	689	PRINTS	Tyrosine kinase catalytic domain signature	542	564	IPR001245	GO:0004672\|GO:0006468
	Viun8g00279	689	FunFam	Mitogen-activated protein kinase kinase kinase 5	309	610	-	-
	Viun8g00279	689	Gene3D	Transferase(Phosphotransferase) domain 1	309	587	-	-
	Viun8g00279	689	Pfam	Protein kinase domain	313	572	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun8g00279	689	MobiDBLite	consensus disorder prediction	581	611	-	-
	Viun8g00279	689	ProSiteProfiles	Protein kinase domain profile.	312	573	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun8g00279	689	SUPERFAMILY	Protein kinase-like (PK-like)	299	612	IPR011009	-
	Viun8g00279	689	SMART	serkin_6	312	573	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun8g00279	689	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	51	586	-	-
	Viun8g00279	689	MobiDBLite	consensus disorder prediction	51	96	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun8g00279	Viun-Chr8	1798165	1803715	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun8g00279	273	575	MAP Kinase Kinase Kinase	AT5G66850	65.017	3.96e-143	432

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Viun8g00279		Pkinase	1.7e-66	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun8g00279	-		-	gmx:100819530	1023.08