Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00263 ATGAAAAAGAAATTAAAGCAAGAGGTAAATCATTGCATGGATGAACTCAACTGTAGCATTGTGGTGATGAATGGGTCACAGGCAAAAATCCTCAGACTTAACTTAGGGTGTTCCGATGAACTCCAAACTCCTTTTTTCTCGGCTACTTCTTCACCAGGCATAGAAATTGCAAAGCTAAAAGGCGGAAGATTGATGCATTCTACCCCAGTGGGTAGCCCTGAAGAAGCAGGTACTTCTGTTATAAGAGATATCGGAGTAAATTCAGGGTCAAGTTCGGAGTCGTTGACTTCTCCTTTCCTTGTCTATGAACAAAACCCTCTGTACGAGGGTCAGGGCCCAAGAAAAAACATACACAAAGAAATCAACGAACCAATAGATTTCAATGTCCAGCCACCATTATATTTTGACATTGAAAGAGATCGCCCTCCCCCGCTATGGCCGCGTCCAACACCATCCTTGTCTAGTCAAAACAAGACTGTATTTTGGATTCCTCAAAACCACATTGTGGACGAGAAGTTTCGGAAAACTAAAAACAACAGTATCATCCAAAGAACTAAATCTCCATCGTCGAAAACTTTACTTGAGAATTTTATACGTTGTGATCAAGAGATGAGAAGAAATGAATACGGGTTTGAACAAGCTCAAAGTAGAAGTTACGACTCGGGCAACAGAGATAGTTCCATACCTTTGGGCAGAACTACCTCAATACCTCCTCCCTTGTGCTCACAGTGTCAGAATAAAGCACCAGTATTTGGAAAGCCTCCAAAACGGTTTTCTTACAAAGAGCTAGAAGAAGCTACTGATATGTTCTCAGATGTGAATTTTTTGGCTGAAGGTGGATTCGGTGTGGTCCACAAGGGAATACTCAAAGATGGCCAGGTTGTTGCGGTGAAACAGTTAAAATTTGGGGGTTCTCAAGCAGATCTTGACTTCTGCAGGGAAGTTCGGGTTTTGAGCTGTGCACAACACAGAAATGTTGTGCTGTTGATAGGATTTTGTACACAGAGCAATTTGAGGATATTAGTTTATGAGTACATATGCAACGGATCCTTAGACCTCTACTTATATGGAGATGAGAGTATGCCTCTCGATTGGAACTCACGCTTAAAGATAGCAATTGGAACTGCACGAGGCTTGCGCTACCTTCACGAAGACTGTAGAGTTGGTTGTATAGTGCACAGAGACCTTCGACCCAAAAATATCCTCTTAACCCATGACTTTGAACCTCTGGTGGCGGATTTTGGGCTTGCTAGGTGGCACTCAGAATGGAATATAGATACAGAAGATCGGGTTCTAGGAACTTCAGGGTATCTTGCACCGGAGTATCTTGACGCTGGAAATCTTACATATAAAGTAGATGTATATGCATTTGGAATTGTATTATTAGAGTTAATAACAGGTAGAAGAATTAGCGAGTTGGAACACTTCAATGGATTCTCGTATCTTCCTGAATGGATTCACCCTCTACGCTTGTTAGAGCCCAGTCAAATCTTACAAAACGTTCGTTCTCTCAAACCATGCTTCAACTCTGAGGAGTCGTTGGAATTTAATCTTCAATTGCAAGCTATGGCTCGAGCTGCTTCGTTGTGTCTCCGTGTGGATCCCGATGCCAGACCCCCAATGTCAAAGATCCTGAGAGTGCTGGAAGGGGGCGATCCAGTTCATCCTATGGGTTTAGACATCAATTCAATTGGTAACACAAGTGGGCATTTAAGCGGTTTGAAGTCACTCACTCCACCAGAAGGTACAATAACTCATTCTCGTACACTATCTCATTGA 1779 0.4255 MKKKLKQEVNHCMDELNCSIVVMNGSQAKILRLNLGCSDELQTPFFSATSSPGIEIAKLKGGRLMHSTPVGSPEEAGTSVIRDIGVNSGSSSESLTSPFLVYEQNPLYEGQGPRKNIHKEINEPIDFNVQPPLYFDIERDRPPPLWPRPTPSLSSQNKTVFWIPQNHIVDEKFRKTKNNSIIQRTKSPSSKTLLENFIRCDQEMRRNEYGFEQAQSRSYDSGNRDSSIPLGRTTSIPPPLCSQCQNKAPVFGKPPKRFSYKELEEATDMFSDVNFLAEGGFGVVHKGILKDGQVVAVKQLKFGGSQADLDFCREVRVLSCAQHRNVVLLIGFCTQSNLRILVYEYICNGSLDLYLYGDESMPLDWNSRLKIAIGTARGLRYLHEDCRVGCIVHRDLRPKNILLTHDFEPLVADFGLARWHSEWNIDTEDRVLGTSGYLAPEYLDAGNLTYKVDVYAFGIVLLELITGRRISELEHFNGFSYLPEWIHPLRLLEPSQILQNVRSLKPCFNSEESLEFNLQLQAMARAASLCLRVDPDARPPMSKILRVLEGGDPVHPMGLDINSIGNTSGHLSGLKSLTPPEGTITHSRTLSH 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00263 592 Gene3D Phosphorylase Kinase; domain 1 239 345 - -
Viun8g00263 592 Gene3D Transferase(Phosphotransferase) domain 1 346 554 - -
Viun8g00263 592 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 346 557 - -
Viun8g00263 592 SMART tyrkin_6 270 548 IPR020635 GO:0004713|GO:0006468
Viun8g00263 592 PANTHER OS01G0750732 PROTEIN 21 552 - -
Viun8g00263 592 SUPERFAMILY Protein kinase-like (PK-like) 250 548 IPR011009 -
Viun8g00263 592 ProSitePatterns Tyrosine protein kinases specific active-site signature. 391 403 IPR008266 GO:0004672|GO:0006468
Viun8g00263 592 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 242 345 - -
Viun8g00263 592 MobiDBLite consensus disorder prediction 571 592 - -
Viun8g00263 592 ProSiteProfiles Protein kinase domain profile. 270 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00263 592 Pfam Protein tyrosine and serine/threonine kinase 276 546 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00263 Viun-Chr8 1686386 1692164 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00263 245 544 Trihelix Transcription Factor Family AT1G68690 45.695 3.76e-74 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Viun8g00263 PK_Tyr_Ser-Thr 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00263 - - var:108323674 1116.68