Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00262 ATGCTAAGAGACGAAACGGTGGGTTCCAGAAGCGCCAGGCACACCGCCGCCTCCGCCACCGTCTCCAACAAGGTTCTCGTCGCCGTCAAGGCGGAGAAGGTGATCTCAAACACCGCATTAGCCTGGGCGCTCACTCATGTCGTTCACTCCAGCGACTCCATCACGCTCCTCGCCGTTTACTCTGCTCAAAAAACCGGCAGAAGATTCTGGCATTTTTCGAGAATTGCTGGAGACTGTACTACCGGACCGGCGGCGAAATTGCCGGAGCGAATTTCAGATATCTCCGAGTCTTGTGCGCAGATGGTGCTTCAGTTGCACAATCAAGTTGAGGTGAGGGTAAAGATTAAGGTGGTCACGGGTACTCCCAGTGGTGCTGTGGCGGCTGAGGCTAGATGGAGCGGTTCCCATTGGGTCATACTGGACAAGAAATTAAAGCAAGAGGTAAATCATTGCATGGATGAACTCAACTGTAGCATTGTGGTGATGAATGGGTCACAGGCAAAAATCCTCAGACTTAACTTAGGGTGTTCCGATGAACTCCAAACTCCTTTTTTCTCGGCTACTTCTTCACCAGGCATAGAAATTGCAAAGCTAAAAGGCGGAAGATTGATGCATTCTACCCCAGTGGGTAGCCCTGAAGAAGCAGGTACTTCTGTTATAAGAGATATCGGAGTAAATTCAGGGTCAAGTTCGGAGTCGTTGACTTCTCCTTTCCTTGTCTATGAACAAAACCCTCTGTACGAGGGTCAGGGCCCAAGAAAAAACATACACAAAGAAATCAACGAACCAATAGATTTCAATGTCCAGCCACCATTATATTTTGACATTGAAAGAGATCGCCCTCCCCCGCTATGGCCGCGTCCAACACCATCCTTGTCTAGTCAAAACAAGACTGTATTTTGGATTCCTCAAAACCACATTGTGGACGAGAAGTTTCGGAAAACTAAAAACAACAGTATCATCCAAAGAACTAAATCTCCATCGTCGAAAACTTTACTTGAGAATTTTATACGTTGTGATCAAGAGATGAGAAGAAATGAATACGGGTTTGAACAAGCTCAAAGTAGAAGTTACGACTCGGGCAACAGAGATAGTTCCATACCTTTGGGCAGAACTACCTCAATACCTCCTCCCTTGTGCTCACAGTGTCAGAATAAAGCACCAGTATTTGGAAAGCCTCCAAAACGGTTTTCTTACAAAGAGCTAGAAGAAGCTACTGATATGTTCTCAGATGTGAATTTTTTGGCTGAAGGTGGATTCGGTGTGGTCCACAAGGGAATACTCAAAGATGGCCAGGTTGTTGCGGTGAAACAGTTAAAATTTGGGGGTTCTCAAGCAGATCTTGACTTCTGCAGGGAAGTTCGGGTTTTGAGCTGTGCACAACACAGAAATGTTGTGCTGTTGATAGGATTTTGTACACAGAGCAATTTGAGGATATTAGTTTATGAGTACATATGCAACGGATCCTTAGACCTCTACTTATATGGAGATGAGAGTATGCCTCTCGATTGGAACTCACGCTTAAAGATAGCAATTGGAACTGCACGAGGCTTGCGCTACCTTCACGAAGACTGTAGAGTTGGTTGTATAGTGCACAGAGACCTTCGACCCAAAAATATCCTCTTAACCCATGACTTTGAACCTCTGGTGGCGGATTTTGGGCTTGCTAGGTGGCACTCAGAATGGAATATAGATACAGAAGATCGGGTTCTAGGAACTTCAGGGTATCTTGCACCGGAGTATCTTGACGCTGGAAATCTTACATATAAAGTAGATGTATATGCATTTGGAATTGTATTATTAGAGTTAATAACAGGTAGAAGAATTAGCGAGTTGGAACACTTCAATGGATTCTCGTATCTTCCTGAATGGATTCACCCTCTACGCTTGTTAGAGCCCAGTCAAATCTTACAAAACGTTCGTTCTCTCAAACCATGCTTCAACTCTGAGGAGTCGTTGGAATTTAATCTTCAATTGCAAGCTATGGCTCGAGCTGCTTCGTTGTGTCTCCGTGTGGATCCCGATGCCAGACCCCCAATGTCAAAGATCCTGAGAGTGCTGGAAGGGGGCGATCCAGTTCATCCTATGGGTTTAGACATCAATTCAATTGGTAACACAAGTGGGCATTTAAGCGGTTTGAAGTCACTCACTCCACCAGAAGGTACAATAACTCATTCTCGTACACTATCTCATTGA 2196 0.4513 MLRDETVGSRSARHTAASATVSNKVLVAVKAEKVISNTALAWALTHVVHSSDSITLLAVYSAQKTGRRFWHFSRIAGDCTTGPAAKLPERISDISESCAQMVLQLHNQVEVRVKIKVVTGTPSGAVAAEARWSGSHWVILDKKLKQEVNHCMDELNCSIVVMNGSQAKILRLNLGCSDELQTPFFSATSSPGIEIAKLKGGRLMHSTPVGSPEEAGTSVIRDIGVNSGSSSESLTSPFLVYEQNPLYEGQGPRKNIHKEINEPIDFNVQPPLYFDIERDRPPPLWPRPTPSLSSQNKTVFWIPQNHIVDEKFRKTKNNSIIQRTKSPSSKTLLENFIRCDQEMRRNEYGFEQAQSRSYDSGNRDSSIPLGRTTSIPPPLCSQCQNKAPVFGKPPKRFSYKELEEATDMFSDVNFLAEGGFGVVHKGILKDGQVVAVKQLKFGGSQADLDFCREVRVLSCAQHRNVVLLIGFCTQSNLRILVYEYICNGSLDLYLYGDESMPLDWNSRLKIAIGTARGLRYLHEDCRVGCIVHRDLRPKNILLTHDFEPLVADFGLARWHSEWNIDTEDRVLGTSGYLAPEYLDAGNLTYKVDVYAFGIVLLELITGRRISELEHFNGFSYLPEWIHPLRLLEPSQILQNVRSLKPCFNSEESLEFNLQLQAMARAASLCLRVDPDARPPMSKILRVLEGGDPVHPMGLDINSIGNTSGHLSGLKSLTPPEGTITHSRTLSH 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00262 731 Gene3D Transferase(Phosphotransferase) domain 1 485 692 - -
Viun8g00262 731 MobiDBLite consensus disorder prediction 710 731 - -
Viun8g00262 731 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 381 484 - -
Viun8g00262 731 PANTHER OS01G0750732 PROTEIN 160 691 - -
Viun8g00262 731 Gene3D HUPs 9 175 IPR014729 -
Viun8g00262 731 ProSitePatterns Tyrosine protein kinases specific active-site signature. 530 542 IPR008266 GO:0004672|GO:0006468
Viun8g00262 731 Pfam Protein tyrosine and serine/threonine kinase 415 685 IPR001245 GO:0004672|GO:0006468
Viun8g00262 731 SUPERFAMILY Protein kinase-like (PK-like) 389 687 IPR011009 -
Viun8g00262 731 SMART tyrkin_6 409 687 IPR020635 GO:0004713|GO:0006468
Viun8g00262 731 ProSiteProfiles Protein kinase domain profile. 409 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00262 731 Gene3D Phosphorylase Kinase; domain 1 378 484 - -
Viun8g00262 731 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 485 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00262 Viun-Chr8 1686382 1692965 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00262 384 683 Trihelix Transcription Factor Family AT1G68690 45.695 3.43e-73 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Viun8g00262 PK_Tyr_Ser-Thr 2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00262 - - var:108323674 1383.24