Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00250 ATGGGTTGGCTTAGCAGAATTTTCAAAGGGACTGAGCAGAAGATTTCGGAGGGCCATTATAGTAAAGAGGATGCTGGTTATTATTTGCCATCGACTTCGGGGGATGTTTGGAACCAGAACGAGAATGAGGATATAGATCGTGCTATTGCACTGTCGCTGGTGGAAGAGAGCGAGAGAACACACAATGTAAATGACAACAGATCACAGTTAGAAGAAGATGAACAACTTGCCAGAGCTTTAGAAGAAAGTCTAAACGTGGACTCTCCTCCCAGATATGGAAATGAAAATGCGTTTCAACCAATTCAGTATTTCCCCATGGGGTCCAGGATTTGTGCTGGCTGCTATACTGAGATTGGTTATGGGCGATATCTTAATTGCTTGAACGCATTCTGGCATCCTGAATGCTTCCGCTGCCGAGCTTGCAACCTACCAATCTCTGATTATGAGTTCTCCACATCTGGGAATTACCCTTACCATAAATCATGTTATAAGGAAAGCTACCACCCAAAATGTGATGTCTGCAAGCACTTTATTCCAACAAATCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGGTCCAGAAATATTGCCCTTCTCATGAACATGACGGTACTCCACGATGTTGCAGTTGTGAGCGAATGGAGTCGCAAGAGGCAGGATATATTGCTCTTAAGGATGGCCGGAAGCTCTGTTTAGAGTGTCTGGATTCTTCTATCATGGATACAAATGAATGCCAACCCCTTTATGCTGATATACAAAGATTTTATGAAAGCCTAAATATGAAACTGGACCAGCAAATTCCACTACTATTGGTTGAAAGACAAGCATTGAATGAAGCAAGAGAGGGAGATAAGAATGGACATTATCACATGCCGGAAACCAGAGGGCTCTGCCTCTCAGAGGAGCTCACCACTTTCAGACGACCTAGATTTGGGACAGGAAATGGAGCAATGGACATGAGAGCACAGCAATACAGGATGACTCCACATTGTGATGTGACGGCTATTCTCATTTTATATGGTCTTCCAAGATTGCTCACTGGATCCATCCTAGCCCATGAGATGATGCATGCCTGGCTTCGACTTAAAGGTTATCGGACTCTAAGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCATATGTGGTTGGAGTCTGAACTTAGTTCTGCATCAGGCAGCAACTTTGTATCAGCTTCATCCTCATCTGCATCACACACATCTAAAAAGGGTAAAAGACCTCAGTTTGAGAGAAAGCTTGGGGAGTTCTTCAAACACCAGATTGAATCAGACATTTCCCCTGTTTATGGAGATGGGTTTAGGGCAGGTCAAAAAGCAGTGCGTAAATATGGTCTACAAAGGACCCTTCACCACATCAAGATGACGGGGACTTTTCCATATTAA 1413 0.436 MGWLSRIFKGTEQKISEGHYSKEDAGYYLPSTSGDVWNQNENEDIDRAIALSLVEESERTHNVNDNRSQLEEDEQLARALEESLNVDSPPRYGNENAFQPIQYFPMGSRICAGCYTEIGYGRYLNCLNAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWVQKYCPSHEHDGTPRCCSCERMESQEAGYIALKDGRKLCLECLDSSIMDTNECQPLYADIQRFYESLNMKLDQQIPLLLVERQALNEAREGDKNGHYHMPETRGLCLSEELTTFRRPRFGTGNGAMDMRAQQYRMTPHCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLSQDVEEGICQVLAHMWLESELSSASGSNFVSASSSSASHTSKKGKRPQFERKLGEFFKHQIESDISPVYGDGFRAGQKAVRKYGLQRTLHHIKMTGTFPY 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00250 470 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 104 136 - -
Viun8g00250 470 ProSiteProfiles LIM domain profile. 109 169 IPR001781 -
Viun8g00250 470 FunFam Protein DA1-related 1 105 164 - -
Viun8g00250 470 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 40 59 IPR003903 -
Viun8g00250 470 ProSitePatterns LIM zinc-binding domain signature. 111 145 IPR001781 -
Viun8g00250 470 SMART lim_4 110 162 IPR001781 -
Viun8g00250 470 Pfam Protein DA1 261 465 IPR022087 -
Viun8g00250 470 Pfam LIM domain 111 165 IPR001781 -
Viun8g00250 470 CDD LIM_DA1 111 163 - -
Viun8g00250 470 Coils Coil 63 83 - -
Viun8g00250 470 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 137 192 - -
Viun8g00250 470 SMART uim 71 90 IPR003903 -
Viun8g00250 470 SMART uim 40 59 IPR003903 -
Viun8g00250 470 Gene3D Cysteine Rich Protein 102 169 - -
Viun8g00250 470 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 71 90 IPR003903 -
Viun8g00250 470 PANTHER PROTEIN DA1-RELATED 2 3 470 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00250 Viun-Chr8 1582626 1588852 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun8g00250 DA1-like 6.4e-94 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00250 - - gmx:100783253 873.618