Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00249 ATGAATCATGTTGCAATTCTCTTCACAATAACGTTTTTTCTAGTTTGTTTTGATGGCAAGGCTCAGCAAAATTACTCTGGGAATTCAATTCTCAGCTGCAAGAATGATGACAAAATGGGGCCATCACCTACATTCCTCTACACCTGCAATGGCCTCAACAAATCATGCATGGCCTTCTTAATCTTCAAATCAAGACCTCCTTTTAATTCCATTCTCACAGTTTCCAACCTCACATCATCAAACCCAGAAGAGGTTGCAAGAATCAATGGTGCAACTGTGCTCACGGAGTTCCCAACTGGGAAAGAAATGATTGTCCCTATGAACTGTTCTTGTTTAACCAGGGACTATTACCAAGCTGAAACTGAATATGTATTGGGGCAACACCCAACATATTTCACAGTGGCAAATAACACTTTTCAGGGTTTGACCACTTGTGATTCCCTAATGCGTGCTAATCCATATGGGGAATTTGATTTGCTTCCAGGCATGGAGTTGCACGTGCCACTCAGATGTGCTTGTCCTACAATGCATCAGGTCACGAACGGCACCAAGTATTTGCTGACATACTCAGTGAACTGGGGTGATAACATTACAAGTATTGCTGCAAGATTCAATGTAGCAGAAAGTAATGTGGTTGAGGCCAATGGTTTTAACACACCAGCAGAAAATCTTTATCCCTTCACAACTGTTCTGATTCCTTTGCCTAGTGAACCTCCGAGTTCAATGACTACAGTTGTTAGTGATCCACCTGATATGTCACCTCCTCTTGTTTGCAGCTCCATGAAGTGCAAGTCAAAGAGGAAATTCCACACTGCTATTGCCATCACAGGGGGTTCCGTTGTGGTTCTCTGTGCTGTTCTTTATGGGGTTTTTCTGTTCAGAAAGAGATCTTCAAGGTTCGTTAAGAGAGGTGAAGAAGGTGAGAAAGCAAAGAGGGTGTCTTCAGATGATATCCGTGGTGAGATAGCGATCATTGAGCATCAATCTAAAGTTTATAAGTTTGAGGAAATAAATGAGGCCACAGAAAATTTTAGTTCAAAGAATAGAATTAAAGGTTCTGTGTTTCGTGGGGTATTTGGTAATGACAGGAACATATTGGCTGTTAAAAAAATGAGAGGAGATGCATCCAAGGAAGTGAATTTGCTGAAAAGAATCAACCATTTCAACCTGATAAAGCTGCAAGGTTACTGTGAAAACGATGCTTGTTCTTATCTTGTTTATGAGTACATGGAAAATGGCTCTTTGAGAGAATGGCTAAGCGAAAACAGGACTACCGAGCACCAGATTTTGGCAAAGAGGATTTTGATTGCTCTGGATATTGCCAATGGTCTTCAGTATCTTCACAACTTCACTGAACCTTCCTATGTGCACAGGAACATAAACAGTGGAAACATTCTTCTAAACAGAGATCTAAGAGCCAAGATAGCAAATTTCGCTCTAGCTGAAGAATCAGAAAGGAAAATAACTTCCACTCGTGCCTTGTTTATGGAGAGGGGTTATATTGCTCCAGAGTATCTGGAAGCAGGGATGGTCACCACCAAAATGGACGTTTATGCTTTTGGAGTGGTACTGTTGGAATTGATCACAGGTAAAGATTTTGTTACTATACCAGAAGAGAGAGAAGCAATGCTTCATGTAGTCATAGTAAGCTTCATTGGTAAAGAGAATGAAGAAGAGAAAGTGAGTTTGTTCGTTGATCCTAGCTTCACTGGAAACAATGAGAAAGTGTGTGCTCTGCAGCTAGTTAAATTAGGTCTAACCTGCTTGATTGAAGAACCAGAAGAGAGGCCAACCATAGTAGAAGTAGTTTCTAGCTTATTGAAAATATATGTAAGCTATATGGACCAAATATTACCACTTAGCATCAACAGTAGTCCCAGCATCAACAATAGTCTCAGCATGGAGATGTGA 1911 0.4066 MNHVAILFTITFFLVCFDGKAQQNYSGNSILSCKNDDKMGPSPTFLYTCNGLNKSCMAFLIFKSRPPFNSILTVSNLTSSNPEEVARINGATVLTEFPTGKEMIVPMNCSCLTRDYYQAETEYVLGQHPTYFTVANNTFQGLTTCDSLMRANPYGEFDLLPGMELHVPLRCACPTMHQVTNGTKYLLTYSVNWGDNITSIAARFNVAESNVVEANGFNTPAENLYPFTTVLIPLPSEPPSSMTTVVSDPPDMSPPLVCSSMKCKSKRKFHTAIAITGGSVVVLCAVLYGVFLFRKRSSRFVKRGEEGEKAKRVSSDDIRGEIAIIEHQSKVYKFEEINEATENFSSKNRIKGSVFRGVFGNDRNILAVKKMRGDASKEVNLLKRINHFNLIKLQGYCENDACSYLVYEYMENGSLREWLSENRTTEHQILAKRILIALDIANGLQYLHNFTEPSYVHRNINSGNILLNRDLRAKIANFALAEESERKITSTRALFMERGYIAPEYLEAGMVTTKMDVYAFGVVLLELITGKDFVTIPEEREAMLHVVIVSFIGKENEEEKVSLFVDPSFTGNNEKVCALQLVKLGLTCLIEEPEERPTIVEVVSSLLKIYVSYMDQILPLSINSSPSINNSLSMEM 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00249 636 SUPERFAMILY Protein kinase-like (PK-like) 327 606 IPR011009 -
Viun8g00249 636 ProSiteProfiles LysM domain profile. 187 232 IPR018392 -
Viun8g00249 636 Pfam Protein tyrosine and serine/threonine kinase 372 606 IPR001245 GO:0004672|GO:0006468
Viun8g00249 636 Gene3D Transferase(Phosphotransferase) domain 1 410 618 - -
Viun8g00249 636 CDD LysM 188 232 IPR018392 -
Viun8g00249 636 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 6 613 - -
Viun8g00249 636 Gene3D Phosphorylase Kinase; domain 1 305 409 - -
Viun8g00249 636 Gene3D LysM domain 175 244 IPR036779 -
Viun8g00249 636 ProSiteProfiles Protein kinase domain profile. 295 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00249 636 FunFam PTI1-like tyrosine-protein kinase 3 410 617 - -
Viun8g00249 636 Pfam LysM domain 189 233 IPR018392 -
Viun8g00249 636 SMART LysM_2 188 233 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00249 Viun-Chr8 1580291 1582453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00249 4 609 Receptor kinase-like Gene Family AT2G23770 37.520 1.34e-124 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Viun8g00249 PK_Tyr_Ser-Thr 5.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00249 - - gmx:100806221 1003.82