Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00244 ATGAAAGTGATGGGCCTAAACCCAAACTCAAAAGACTTTACACTTGCCTGCTTCCTCCTCTCCTTGTTAGGCAATGTAGCATCTGCCACAGTGTTTACCCTCCAAAACCGTTGCAGTTACACAGTTTGGCCGGGGACACTTACCGGCAACGGCGTCGCCACTCTCGGCGATGGCGGTTTTCCCCTGGAGCCAGGTACGGAGGTTCAGCTCACCGCACCATCAGGCTGGTCCGGGCGGTTGTGGGCCAGGACCGGCTGCAGCTTCGACGGATCCGGCATCGGAACATGCACCACCGGAGACTGCGCAGGTGGACTGCGGTGCACCGGGGGAGGCATTCCACCAGCGACTCTGGCGGAGTTCACCGTCGGATTCGCCAGTAACGGCAACAAGGACTTCTACGACGTAAGTCTCGTGGACGGTTACAATGTTGGCATCGGCATCCTGGCTACCAGAGGAACCGGTGACTGCCAGTACGCGGGGTGCGCGGCGGACTTGAACGCCGTGTGTCCGGAGGAATTGCAAGTGAGAGACGGCGGCGGCGCGGTGGTTGCGTGTAAAAGCGCGTGCGCCGCGTTTAACACGTCGGTGTTTTGCTGCACCGGTGAGCACGCAACGCCGCAAACGTGTTCGGCGACACATTATTCGGAGATTTTCAAGAATGCGTGTCCAACAGCGTACAGTTACGCTTACGATGATGCTTCCAGCACTCGCACCTGTTCTGGATCTGATTATGTTATCGCCTTTTGCCCTTAA 753 0.5777 MKVMGLNPNSKDFTLACFLLSLLGNVASATVFTLQNRCSYTVWPGTLTGNGVATLGDGGFPLEPGTEVQLTAPSGWSGRLWARTGCSFDGSGIGTCTTGDCAGGLRCTGGGIPPATLAEFTVGFASNGNKDFYDVSLVDGYNVGIGILATRGTGDCQYAGCAADLNAVCPEELQVRDGGGAVVACKSACAAFNTSVFCCTGEHATPQTCSATHYSEIFKNACPTAYSYAYDDASSTRTCSGSDYVIAFCP 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00244 250 CDD TLP-PA 31 249 - -
Viun8g00244 250 Gene3D Thaumatin 30 250 IPR037176 -
Viun8g00244 250 PIRSF PR5 4 250 IPR001938 -
Viun8g00244 250 ProSitePatterns Thaumatin family signature. 92 107 IPR017949 -
Viun8g00244 250 Pfam Thaumatin family 36 250 IPR001938 -
Viun8g00244 250 SMART tha2 32 250 IPR001938 -
Viun8g00244 250 ProSiteProfiles Thaumatin family profile. 29 250 IPR001938 -
Viun8g00244 250 PANTHER OS03G0233200 PROTEIN 18 250 IPR001938 -
Viun8g00244 250 FunFam Thaumatin-like protein 1a 30 250 - -
Viun8g00244 250 PRINTS Pathogenesis-related protein signature 79 90 IPR001938 -
Viun8g00244 250 PRINTS Pathogenesis-related protein signature 240 249 IPR001938 -
Viun8g00244 250 PRINTS Pathogenesis-related protein signature 92 121 IPR001938 -
Viun8g00244 250 PRINTS Pathogenesis-related protein signature 31 43 IPR001938 -
Viun8g00244 250 SUPERFAMILY Osmotin, thaumatin-like protein 31 250 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00244 Viun-Chr8 1546214 1547860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00244 32 250 Receptor kinase-like Gene Family AT5G38280 46.460 4.67e-59 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00244 - - vum:124831188 490.345