Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00219 ATGTTTAAAGAGATAGGAATTGGCTGTGAAAAACAAGAATTTTTTTCCGAGGAATCTTCAGTTGCCATGTTTCATCGTTGGAGCAATTCTCCTCAGCAAGACCAAGAAAGCAGCGAGCTTCATGCTGAATCAAAGATCAAGGAGCTGAAGGGTGAAATTGGACCCTTATCAGGTCACAGTTTGATATATTGCACTGATGCATGTTTGAAGAGATATTTGGAAGCTCGAAACTGGAATGTAGACAAGTCCAAGAAGATGTTGGGGGAGACTCTGAAGTGGAGATCAACATATAAACCAGAGGAAATTCGCTGGCAAGAGGTTGCAATGGAAGGGGAGACTGGGAAAATGTACAGAGCAAGTTTTCGTGATAGACAAGGAAGATCTGTTCTTATTCTGAGACCAGGAATGCAGAACACTAATTCAATGGAGAATCAGATGCGGCATTTTGTGTATATGTTGGAAAACGCCTTGCTTGATCTTCCACCGGGTGAAGAACAAATGGCATGGTTGATAGACTTCACTGGCTGGTCAATAACCAACAATGTTCCCTTGAAATCAGCCAGAGAGACCATCAACATTTTGCAGAATCATTACCCTGAGAGACTTGCCATAGCATTTCTTTACAACCCCCCTAGAGTTTTTGAAGCCTTTTGGAAGATAGTTAAGTACTTTTTGGATAGCAAGACATTTCAGAAGGTGAAGTTTGTGTACCCAAAGAACAAAGATAGTGTGGAGCTCATGAAGTCCTACTTTGATGAGGAAAACCTTCCCAAAGAACTTGGTGGAAAAAGCACAATGAGTTATAACCACGAGGAGTTCTCCAGATTAATGGTTCAGGATGATTTGAAATGTGCAGCATTTTGGGGATCTGATGAGAAACTCTCAAACCACGTTGCTAATGGGCATTCTGCAGCAGTTTTCAATGAAACTTCACCTGACAAATGTTAA 948 0.4124 MFKEIGIGCEKQEFFSEESSVAMFHRWSNSPQQDQESSELHAESKIKELKGEIGPLSGHSLIYCTDACLKRYLEARNWNVDKSKKMLGETLKWRSTYKPEEIRWQEVAMEGETGKMYRASFRDRQGRSVLILRPGMQNTNSMENQMRHFVYMLENALLDLPPGEEQMAWLIDFTGWSITNNVPLKSARETINILQNHYPERLAIAFLYNPPRVFEAFWKIVKYFLDSKTFQKVKFVYPKNKDSVELMKSYFDEENLPKELGGKSTMSYNHEEFSRLMVQDDLKCAAFWGSDEKLSNHVANGHSAAVFNETSPDKC 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00219 315 SUPERFAMILY CRAL/TRIO N-terminal domain 42 106 IPR036273 -
Viun8g00219 315 SUPERFAMILY CRAL/TRIO domain 104 278 IPR036865 -
Viun8g00219 315 Pfam CRAL/TRIO, N-terminal domain 62 87 IPR011074 -
Viun8g00219 315 SMART sec14_4 110 265 IPR001251 -
Viun8g00219 315 Pfam CRAL/TRIO domain 122 262 IPR001251 -
Viun8g00219 315 Gene3D - 11 296 IPR036865 -
Viun8g00219 315 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 104 268 IPR001251 -
Viun8g00219 315 PANTHER GH16843P 30 294 - -
Viun8g00219 315 CDD SEC14 122 263 IPR001251 -
Viun8g00219 315 FunFam Phosphatidylinositol transfer protein 3 25 297 - -
Viun8g00219 315 SMART CRAL_TRIO_N_2 65 90 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00219 Viun-Chr8 1354374 1356834 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00219 69 257 Acyl Lipid Metabolism Gene Families AT1G55840 27.488 1.50e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00219 K26544 - gmx:100790867 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00219 8 1354374 1356834 Viun8g00219 8 1354374 1356834 ECH