Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00167 ATGTATTCAAACCAAGCGTTTTCTTCAGGGTCCTATGCAGATATGTTGTCTGGGAATCCTCTTTTACCCCATAACTACAGTGAAAATGTTGGAGGACAAAGTGAGTTCAAGTTCATGACATCAATGAGGGACACCATGACTGTGCAATCTATTGATGGGCATTCAAATGCGGCCCCTACAACTGGTCAAGACTCTTTTTCCAATGCTGGAGATTCCCATTCTCATCTTGTTCCAAGAACAACACAAATTGGACTTGTGGACAGTGAGCAAAATGTACAGAGCCAAGGCTTGTCTCTTAGCCTTGGCTCAGTGATGCCTTCTATTGCATCAGTCCCTACCTTTCCATATCAGTATCCTGGCGCAGGTTTCTCTTCACTAATGGCTTCTTCTGTTCCAAATTTAAAGGGAACTTCATCTCTCAAAGATGATGAAGAATTGAGAAATGCCGAGTGCATGGCATCTTTAGCTTCTTCTGGCTTTCACAAAAGGGAGGGTTTGTTGTATACTCCACAACACCCCTCAATGTGCCTCAGTGAAGGCCAAAGCGATGGATCACTAGGCTTCTCCAGCAGTGTCTTGAACTCACAATACCTCAAGGCAGCACAGGAGCTGCTTGATGAAATAGTCAATGTTCGAAAGGCTTTGAAGCAAACTGGTTTAGAGAAGCAACAGAGTTTCCGTGATATTGGTTTAGATGGCTCCAAAGATTCTGATGGAAAATCCACCAGCCAATCAGGGCAGATATCTTCATGTCCCAATAGTTCTGCTGCAAACTCCTCATGTGAACTCTCACCGGCAGAACGACAGAATTTGTTGGACAAAAAGACAAAACTTTTGGCCATGTTGGATGAGGTTGATAAAAGATACAGACAGTACTGCCACCAGATGCAGATCGTGGTTTCATCTTTTGATATGGTTGCTGGCTGTGGAGCAGCTGAACCATACACTGCATTAGCCTTGAGTACAATATCACGGCACTTTCGGTGTTTACGTGATGCCATTAGTGGTCAAATTCAAGTGACTCAAAGGAGCCTTGGAGAACAAGAAGGAATACCTCGTCTCCGCTATGTTGATCAGCAGCTTCGGCAGCAAAAGGCGCTTCAGCAACTCGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATTCTTCGAGCATGGCTCTTTGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAAATTATGCTGGCTAGGCAAACTGGCTTAACAAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGGCTTTGGAAGCCAATGGTTGAAGAAATCTATAAGGAAGAATTTGGCGATTCTGAGATGTGCAGCAATATATTATCATCAGAGAACACACTGAAAGCTCCAAGAGATGATGTTCAATCTTCTGACAGTAAAAGGGAAGAGTCCCAGGACAACTTAATAACAGTTGATGATAGTGATATTCAGCATCATGGGTTGAAGTTGGATCATGCCTCAGAGTTGAACAGAGGGATCCGAGGTAGTGATCATGGAGAAAATGCCATGGATCCTAGAATTGGGAAACTGCAGGGTGACCAAAGGTTCAACATTAACAACAGCAACAGTTCTTATTATGGGGAAGGCTGCATAATTGCTCCTACTCCTGCCACATACGATTTATCTGAGCTAGGTAACATTGGTGTTGGTGGACAGGTGTCACTGGCATTGGAATTGAGGAACTGTGAGAGTGAAGGGTTTGGCTTGTCCAATGATGACATGCATAGAAGACGTAAGAAAACATTGGCCTCTTCCCCAGAGGCTGATCTGCTAGATTACCATTTCACAGACCAAGAAAAGCAACAAAACAAGTTTGGCAATCCTCACCTATTGCACGAGTTTGTTGTGTGA 1899 0.4408 MYSNQAFSSGSYADMLSGNPLLPHNYSENVGGQSEFKFMTSMRDTMTVQSIDGHSNAAPTTGQDSFSNAGDSHSHLVPRTTQIGLVDSEQNVQSQGLSLSLGSVMPSIASVPTFPYQYPGAGFSSLMASSVPNLKGTSSLKDDEELRNAECMASLASSGFHKREGLLYTPQHPSMCLSEGQSDGSLGFSSSVLNSQYLKAAQELLDEIVNVRKALKQTGLEKQQSFRDIGLDGSKDSDGKSTSQSGQISSCPNSSAANSSCELSPAERQNLLDKKTKLLAMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALSTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGDSEMCSNILSSENTLKAPRDDVQSSDSKREESQDNLITVDDSDIQHHGLKLDHASELNRGIRGSDHGENAMDPRIGKLQGDQRFNINNSNSSYYGEGCIIAPTPATYDLSELGNIGVGGQVSLALELRNCESEGFGLSNDDMHRRRKKTLASSPEADLLDYHFTDQEKQQNKFGNPHLLHEFVV 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00167 632 Coils Coil 198 218 - -
Viun8g00167 632 MobiDBLite consensus disorder prediction 226 262 - -
Viun8g00167 632 Pfam Associated with HOX 192 335 IPR006563 -
Viun8g00167 632 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 74 473 - -
Viun8g00167 632 MobiDBLite consensus disorder prediction 458 482 - -
Viun8g00167 632 MobiDBLite consensus disorder prediction 236 262 - -
Viun8g00167 632 MobiDBLite consensus disorder prediction 467 482 - -
Viun8g00167 632 SMART prehox3 186 336 IPR006563 -
Viun8g00167 632 MobiDBLite consensus disorder prediction 52 74 - -
Viun8g00167 632 ProSiteProfiles 'Homeobox' domain profile. 374 437 IPR001356 GO:0003677
Viun8g00167 632 CDD homeodomain 377 438 IPR001356 GO:0003677
Viun8g00167 632 SMART HOX_1 377 441 IPR001356 GO:0003677
Viun8g00167 632 Gene3D - 374 451 - -
Viun8g00167 632 SUPERFAMILY Homeodomain-like 378 443 IPR009057 -
Viun8g00167 632 Pfam Homeobox KN domain 394 433 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00167 Viun-Chr8 1049981 1054415 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00167 76 449 Homeobox Transcription Factor Family AT1G19700 51.637 1.99e-114 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Viun8g00167 POX 5.2e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00167 - - gmx:100775682 1056.97