Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00162 ATGTATTCAAACCAAGCGTTTTCTTCAGGGTCCTATGCAGATATGTTGTCTGGGAATCCCCTTTTACCTCATAACTACAGTGAAACTGTTGGAGGACAAAATGAGTTGAAGTTCATGACATCCTTGAGGGACACCATGACTGTGCAATCTATTGATGGGCATTCAAATGCGCCCCCCACAGCTGATCAAGACTCTTTTTCCAATGCTGGAGATTCCCATTCTCATCTTGTTCCAAGAACAACACAATTGGGACTTGTGGACAGTGAGCAAAGTGTACAGAACCAAGGCCTGTCTCTTAGCCTTGGCTCAGTGATGCCTTCTATTGCATCAGTACCTACCTTTCCATATCAGTATCCCGGCGCAAGTTTCTCTTCACTAATGGCTTCTTCTGTTCCAAATTTAAAGGGCACTTCATCTATTAAAGATGATGAAGCCAGCCTACAAAGGGAATTGAGAAATGCTGAGTGCATGGCATCTTTAGCTTCTTCTGGCTTTCACAAAAGGGAGGGTTTGTTGTATACTCCACAACACCCCTCAATGTGCCTCAGTGAAGGCCAAAGCGATGGATCACTAGGCTTCTCCAGCAGTGTCTTGAACTCACAATACCTCAAGGCAGCACAGGAGCTGCTTGATGAAATAGTCAATGTTCGAAAGGCTTTGAAGCAAACTGGTTTAGAGAAGCAACAGAGTTTCCGTGATATTGGTTTAGATGGCTCCAAAGATTCTGATGGAAAATCCACCAGCCAATCAGGGCAGATATCTTCATGTCCCAATAGTTCTGCTGCAAACTCCTCATGTGAACTCTCACCGGCAGAACGACAGAATTTGTTGGACAAAAAGACAAAACTTTTGGCCATGTTGGATGAGGTTGATAAAAGATACAGACAGTACTGCCACCAGATGCAGATCGTGGTTTCATCTTTTGATATGGTTGCTGGCTGTGGAGCAGCTGAACCATACACTGCATTAGCCTTGAGTACAATATCACGGCACTTTCGGTGTTTACGTGATGCCATTAGTGGTCAAATTCAAGTGACTCAAAGGAGCCTTGGAGAACAAGAAGGAATACCTCGTCTCCGCTATGTTGATCAGCAGCTTCGGCAGCAAAAGGCGCTTCAGCAACTCGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAACCTCTGTTTCAATTCTTCGAGCATGGCTCTTTGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAAATTATGCTGGCTAGGCAAACTGGCTTAACAAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGGCTTTGGAAGCCAATGGTTGAAGAAATCTATAAGGAAGAATTTGGCGATTCTGAGATGTGCAGCAATATATTATCATCAGAGAACACACTGAAAGCTCCAAGAGATGATGTTCAATCTTCTGACAGTAAAAGGGAAGAGTCCCAGGACAACTTAATAACAGTTGATGATAGTGATATTCAGCATCATGGGTTGAAGTTGGATCATGCCTCAGAGTTGAACAGAGGGATCCGAGGTAGTGATCATGGAGAAAATGCCATGGATCCTAGAATTGGGAAACTGCAGGGTGACCAAAGGTTCAACATTAACAACAGCAACAGTTCTTATTATGGGGAAGGCTGCATAATTGCTCCTACTCCTGCCACATACGATTTATCTGAGCTAGGTAACATTGGTGTTGGTGGACAGGTGTCACTGGCATTGGAATTGAGGAACTGTGAGAGTGAAGGGTTTGGCTTGTCCAATGATGACATGCATAGAAGACGTAAGAAAACATTGGCCTCTTCCCCAGAGGCTGATCTGCTAGATTACCATTTCACAGACCAAGAAAAGCAACAAAACAAGTTTGGCAATCCTCACCTATTGCACGAGTTTGTTGTGTGA 1914 0.4425 MYSNQAFSSGSYADMLSGNPLLPHNYSETVGGQNELKFMTSLRDTMTVQSIDGHSNAPPTADQDSFSNAGDSHSHLVPRTTQLGLVDSEQSVQNQGLSLSLGSVMPSIASVPTFPYQYPGASFSSLMASSVPNLKGTSSIKDDEASLQRELRNAECMASLASSGFHKREGLLYTPQHPSMCLSEGQSDGSLGFSSSVLNSQYLKAAQELLDEIVNVRKALKQTGLEKQQSFRDIGLDGSKDSDGKSTSQSGQISSCPNSSAANSSCELSPAERQNLLDKKTKLLAMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALSTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPETSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGDSEMCSNILSSENTLKAPRDDVQSSDSKREESQDNLITVDDSDIQHHGLKLDHASELNRGIRGSDHGENAMDPRIGKLQGDQRFNINNSNSSYYGEGCIIAPTPATYDLSELGNIGVGGQVSLALELRNCESEGFGLSNDDMHRRRKKTLASSPEADLLDYHFTDQEKQQNKFGNPHLLHEFVV 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00162 637 MobiDBLite consensus disorder prediction 50 74 - -
Viun8g00162 637 SMART prehox3 191 341 IPR006563 -
Viun8g00162 637 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 75 478 - -
Viun8g00162 637 MobiDBLite consensus disorder prediction 241 267 - -
Viun8g00162 637 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677
Viun8g00162 637 Pfam Associated with HOX 197 340 IPR006563 -
Viun8g00162 637 Coils Coil 203 223 - -
Viun8g00162 637 CDD homeodomain 382 443 IPR001356 GO:0003677
Viun8g00162 637 SMART HOX_1 382 446 IPR001356 GO:0003677
Viun8g00162 637 MobiDBLite consensus disorder prediction 463 487 - -
Viun8g00162 637 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677|GO:0006355
Viun8g00162 637 MobiDBLite consensus disorder prediction 472 487 - -
Viun8g00162 637 Gene3D - 379 456 - -
Viun8g00162 637 SUPERFAMILY Homeodomain-like 383 448 IPR009057 -
Viun8g00162 637 MobiDBLite consensus disorder prediction 231 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00162 Viun-Chr8 1040173 1054415 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00162 192 455 Homeobox Transcription Factor Family AT2G16400 63.004 5.30e-113 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Viun8g00162 POX 5.3e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00162 - - gmx:100775682 1084.71