Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00159 ATGTATTCAAACCAAGCGTTTTCTTCAGGGTCCTATGCAGATATGTTGTCTGGGAATCCCCTTTTACCTCATAACTACAGTGAAACTGTTGGAGGACAAAATGAGTTGAAGTTCATGACATCCTTGAGGGACACCATGACTGTGCAATCTATTGATGGGCATTCAAATGCGCCCCCCACAGCTGATCAAGACTCTTTTTCCAATGCTGGAGATTCCCATTCTCATCTTGTTCCAAGAACAACACAATTGGGACTTGTGGACAGTGAGCAAAGTGTACAGAACCAAGGCCTGTCTCTTAGCCTTGGCTCAGTGATGCCTTCTATTGCATCAGTACCTACCTTTCCATATCAGTATCCCGGCGCAAGTTTCTCTTCACTAATGGCTTCTTCTGTTCCAAATTTAAAGGGCACTTCATCTATTAAAGATGATGAAGCCAGCCTACAAAGGGAATTGAGAAATGCTGAGTGCATGGCATCTTTAGCTTCTTCTGGCTTTCACAAAAGGGAGGGTTTGTTGTATACTCCACAACACCCCTCAATGTGCCTCAGTGAAGGCCAAAGCGATGGATCACTAGGCTTCTCCAGCAGTGTCTTGAACTCACAATACCTCAAGGCAGCACAGGAGCTGCTTGATGAAATAGTCAATGTTCGAAAGGCTTTGAAGCAAACTGGTTTAGAGAAGCAACAGAGTTTCCGTGATATTGGTTTAGATGGCTCCAAAGATTCTGATGGAAAATCCACCAGCCAATCAGGGCAGATATCTTCATGTCCCAATAGTTCTGCTGCAAACACTTCATGTGAGCTCTCACCTGCAGAACGACAGAATTTATTGGACAAGAAGACAAAACTTCTATCCATGTTGGACGAGGTTGATAAAAGATACAGACAGTACTGCCACCAGATGCAGATCGTGGTTTCATCTTTTGATATGGTTGCTGGTTGTGGAGCAGCTGAACCATACACCGCACTAGCCTTGCGCACGATATCACGTCACTTTCGGTGTTTACGCGATGCCATTAGTGGCCAAATTCAAGTGACTCAAAGGAGCCTTGGAGAACAAGAGGGAATACCTCGTCTACGCTATGTTGATCAGCAGCTTCGGCAGCAAAAGGCCCTTCAGCAACTTGGTGTAATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAAACTCTGTTTCAATACTTCGAGCATGGCTCTTTGAGCATTTCCTTCATCCTTATCCAAAGGATTCAGAGAAAATTATGCTGGCTAGGCAAACTGGCTTAACAAGAAACCAGGTGGCAAATTGGTTCATTAATGCAAGGGTGCGTCTTTGGAAGCCAATGGTTGAAGAAATGTACAAAGAAGAATTTGGAGATTCCGAGATGAGCAGCAATCTATTACCATCAGAGAGCCCACTGAAAGCTCCAAGAGATGATGTTCAATCTTCTGACAGCAAAAGGGAAGAGTCCCAGGAAAACTTAATAACAGTGGATGATAGTGTTATTCAGCATCATGGATTGAAGTTGGATCATGCCTCGGAGTTGGAAAGGGGTATCCAAAGTAGTGATCATGAAGAAAATGCCATGGATCCTAGAATTGGGAAACTGCAGGGTGACCAAAGATTCAACATCAATAACAGCAACAGTTCTTATTACGGGGAAGGCTGCATAATTGCTCCTACTACTGCCACATATGATTTGTCAGAGTTAGGTAACATTGGTGTAGGTGGACACGTGTCACTAGCATTGGAATTGAGGAACTGTGAAAGTGAAGGGTTTGGCGATGACATGCATAGAAGACGTAAGAAAACATTGGCTTCTTCCCCAGAGGCTGATCTGCTAGATTACCATTTCACAGAGCAAGGAAAGCAACAAAACAAGTTTGGCAATCCTCACCTATTACACGAATTTGTTGTGTGA 1905 0.4415 MYSNQAFSSGSYADMLSGNPLLPHNYSETVGGQNELKFMTSLRDTMTVQSIDGHSNAPPTADQDSFSNAGDSHSHLVPRTTQLGLVDSEQSVQNQGLSLSLGSVMPSIASVPTFPYQYPGASFSSLMASSVPNLKGTSSIKDDEASLQRELRNAECMASLASSGFHKREGLLYTPQHPSMCLSEGQSDGSLGFSSSVLNSQYLKAAQELLDEIVNVRKALKQTGLEKQQSFRDIGLDGSKDSDGKSTSQSGQISSCPNSSAANTSCELSPAERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMSSNLLPSESPLKAPRDDVQSSDSKREESQENLITVDDSVIQHHGLKLDHASELERGIQSSDHEENAMDPRIGKLQGDQRFNINNSNSSYYGEGCIIAPTTATYDLSELGNIGVGGHVSLALELRNCESEGFGDDMHRRRKKTLASSPEADLLDYHFTEQGKQQNKFGNPHLLHEFVV 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00159 634 SMART prehox3 191 341 IPR006563 -
Viun8g00159 634 MobiDBLite consensus disorder prediction 50 74 - -
Viun8g00159 634 Pfam Associated with HOX 197 340 IPR006563 -
Viun8g00159 634 SUPERFAMILY Homeodomain-like 383 449 IPR009057 -
Viun8g00159 634 MobiDBLite consensus disorder prediction 472 489 - -
Viun8g00159 634 FunFam BEL1-like homeodomain protein 4 385 447 - -
Viun8g00159 634 MobiDBLite consensus disorder prediction 241 267 - -
Viun8g00159 634 Coils Coil 203 223 - -
Viun8g00159 634 CDD homeodomain 382 443 IPR001356 GO:0003677
Viun8g00159 634 MobiDBLite consensus disorder prediction 452 492 - -
Viun8g00159 634 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 75 477 - -
Viun8g00159 634 MobiDBLite consensus disorder prediction 514 535 - -
Viun8g00159 634 Pfam Homeobox KN domain 399 438 IPR008422 GO:0003677|GO:0006355
Viun8g00159 634 ProSiteProfiles 'Homeobox' domain profile. 379 442 IPR001356 GO:0003677
Viun8g00159 634 Gene3D - 379 456 - -
Viun8g00159 634 SMART HOX_1 382 446 IPR001356 GO:0003677
Viun8g00159 634 MobiDBLite consensus disorder prediction 231 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00159 Viun-Chr8 1040099 1044889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00159 76 466 Homeobox Transcription Factor Family AT1G19700 51.090 2.06e-114 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Viun8g00159 POX 5e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00159 - - gmx:100775682 1077.39