Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00154 ATGGTAAGAGTTTTCTTTTTCTGCCTCATCTCCACGTTCTTATTATCTACACAAGGAACTCTTACTCTTACTCCAAATGAATCAATCCAAGGTAATAAAACCATGGTTTCTTCTGCTGGAACTTTTGAAGCTGGATTCTTCAAGTTTGGAAATTCACAAGGTCAATACTTTTGTATATGGTACAAGAACATATCACCAAAGACTATTGTGTGGGTGGCCAACAGAGATGCCCCAGTGAAAAACTCAACACCATTTTTCACATTAACAGAAGAAGGAGTTCCTGTTATTCGTGATGCCTCAGGGAGTGTTCTGTGGTTCTCCAATTCATCAAGAAATTCTAAGAAACCAGTCATGCAGCTTCTAGATTCCGGAAATCTTGTTGTGCAAGATGGAGACAGCACAAAAGATCTTTTGTGGGAAAGTTTTGACTACCCTGGTGACACTTTCCTTGCAGGAATGAAACTTCGTACAAACTTTGTGTCTGGTCCTTTTAGGTTTCTCACATCTTGGAGAAACGCAGAAGATCCTGGCTTTGGTGAGTTTTCATATCACATAGATGCTCATGGCTTTCCTCAACTGGTTACTACAAAGGGGGAACTTTTGTTCAGTAGAGGAGGGTCATGGATCGGCAATGTTTTCAGTGGAGTTTCATGGAGAAGAATGCTTAGACTCGTAAATTTTTCTCTTGAGATCAACGACAAGGAAGTCATTTACCAATATAAAACCTTAGAGGCTGAAACTATTACTAGGTTAGTGATCAACCCATCTGGTTTTGTGCAACGTTTGTTATGGTCGGGTGGTAGCCGGGGTTGGGAGATTTTATCCACTCGTCCCATGGATCAGTGTGAATATTATGCCTTTTGTGATGTGAATTCACTGTGTAATGTTACCAACTCTCCAAAAATATGTACTTGCTTAGAAGGTTTTGTACCAAAGTTCTATGAAAAGTGGAGTTCACTGAATTGGTCTGGTGGGTGTGTGAGAAGAGTGAATTTGAGTTGTGATGGTGATAGGTTTCGGAAGTACACAGGAATGAAGTTGCCAGACACTTCTTTTTCTTGGTATAACGAGAGTTTGAGCCTTGAGAAATGTGAGAATTTGTGTCTGAAAAACTGTTCTTGCACAGCATATGCAAATATAGATGCAAGTGGGAGAGGGTGCTTGCTTTGGTTTGGTGACATTACTGATTTGAGTAGACACACAGACCAAGGACAAGACATTTACATAAGACTTGAAGCTTCAGAGTTAGTTTATTCCTCAGATCATGGAGGCAGTAACAAGAGCTTCAATAGCAAGAACATTGCAGGGATAATAGTAAGCATTGTTTTCTTGGTCGTGGTACTTGGATTGGCCACATTCACATATATGAAGAGGAAGAAGCTCGCGAAGAGAGAGGTGCTAAAAATATTTCACTGGAAGTACAAAAGGGAGAAGGAAGATGTGGAGTTATCAACAATATTTGATTTTTCTACCATTTCTGCTGCTACAAATCACTTTTCACCCAGTAACATATTAGGAGAAGGTGGCTTCGGGCCAGTGTACAAGGGTATACTGCAAGATGGGCAAGAGATTGCAGTCAAGAGGCTTGCAAAAACTTCTGAACAAGGAGCAGAGCAGTTCAAGAATGAAGTCATGTTAATGGCAAAACTTCAACATCGAAATCTTATAAAACTTCATGGTTGTTCTACTCACCAAGAAGAAAGGCTCTTGATCTATGAATACATGCATAACAGAAGCTTGGATAACTTCATTTTTGATTCAACGCAAAGCAAACAACTAGATTTGACAAAGCGTCTTCAAATTATTGATGGTATAGCACGAGGGCTACTCTATCTTCACCAAGACTCTAGATTGAGAATCATCCACAGAGATCTCAAAGCCAGCAATATTCTTCTGGACAACGATATGAATCCAAAGATATCAGATTTTGGTTTGGCTAGAACATTTGGAGGAGATCAAGCTGAGGCCAATACAAATAGAGTGATGGGAACATATGGTTATATGCCTCCTGAATATGCTCTCCATGGACATTTTTCAATCAAATCTGATGTATTTAGCTTTGGTGTGATGGTAATGGAGATAATCAGTGGGAGAAAGAATCGGAATTTCCATGACTCTAAGCATCAGCTTAATCTTCTTAGTCATGCATGGAGATTGTGGATTGAAGAAAAGCCATTGGAGCTAATAGATGAGGAACAACACAGTTTCCCATTCAGGCAGAATCTTCTTCGAGAAGTTGTGGAGATAGATCACAAAATGAAGTTACAGTGTCCTTGTTACAGCCACGGTAGAGAAACTATCGTGTTCATTATTCAAGGATTAAGATCTTGCAGAACTTGTTAG 2343 0.3969 MVRVFFFCLISTFLLSTQGTLTLTPNESIQGNKTMVSSAGTFEAGFFKFGNSQGQYFCIWYKNISPKTIVWVANRDAPVKNSTPFFTLTEEGVPVIRDASGSVLWFSNSSRNSKKPVMQLLDSGNLVVQDGDSTKDLLWESFDYPGDTFLAGMKLRTNFVSGPFRFLTSWRNAEDPGFGEFSYHIDAHGFPQLVTTKGELLFSRGGSWIGNVFSGVSWRRMLRLVNFSLEINDKEVIYQYKTLEAETITRLVINPSGFVQRLLWSGGSRGWEILSTRPMDQCEYYAFCDVNSLCNVTNSPKICTCLEGFVPKFYEKWSSLNWSGGCVRRVNLSCDGDRFRKYTGMKLPDTSFSWYNESLSLEKCENLCLKNCSCTAYANIDASGRGCLLWFGDITDLSRHTDQGQDIYIRLEASELVYSSDHGGSNKSFNSKNIAGIIVSIVFLVVVLGLATFTYMKRKKLAKREVLKIFHWKYKREKEDVELSTIFDFSTISAATNHFSPSNILGEGGFGPVYKGILQDGQEIAVKRLAKTSEQGAEQFKNEVMLMAKLQHRNLIKLHGCSTHQEERLLIYEYMHNRSLDNFIFDSTQSKQLDLTKRLQIIDGIARGLLYLHQDSRLRIIHRDLKASNILLDNDMNPKISDFGLARTFGGDQAEANTNRVMGTYGYMPPEYALHGHFSIKSDVFSFGVMVMEIISGRKNRNFHDSKHQLNLLSHAWRLWIEEKPLELIDEEQHSFPFRQNLLREVVEIDHKMKLQCPCYSHGRETIVFIIQGLRSCRTC 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00154 780 ProSiteProfiles Bulb-type lectin domain profile. 20 141 IPR001480 -
Viun8g00154 780 Gene3D - 16 142 IPR036426 -
Viun8g00154 780 PIRSF SRK 1 759 IPR024171 GO:0004674
Viun8g00154 780 SMART blect_4 26 145 IPR001480 -
Viun8g00154 780 Pfam D-mannose binding lectin 68 171 IPR001480 -
Viun8g00154 780 CDD B_lectin 26 145 IPR001480 -
Viun8g00154 780 Pfam PAN-like domain 334 397 IPR003609 -
Viun8g00154 780 ProSiteProfiles PAN/Apple domain profile. 334 412 IPR003609 -
Viun8g00154 780 Pfam S-locus glycoprotein domain 204 313 IPR000858 GO:0048544
Viun8g00154 780 ProSiteProfiles Protein kinase domain profile. 499 754 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00154 780 Pfam Protein tyrosine and serine/threonine kinase 503 711 IPR001245 GO:0004672|GO:0006468
Viun8g00154 780 Gene3D Hepatocyte Growth Factor 332 413 - -
Viun8g00154 780 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 16 142 - -
Viun8g00154 780 SUPERFAMILY Protein kinase-like (PK-like) 486 723 IPR011009 -
Viun8g00154 780 SMART ntp_6 334 411 IPR003609 -
Viun8g00154 780 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 575 772 - -
Viun8g00154 780 CDD PAN_AP_plant 330 411 - -
Viun8g00154 780 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 5 729 - -
Viun8g00154 780 Gene3D Phosphorylase Kinase; domain 1 472 574 - -
Viun8g00154 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Viun8g00154 780 SMART serkin_6 499 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00154 780 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 462 574 - -
Viun8g00154 780 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 176 IPR036426 -
Viun8g00154 780 Gene3D Transferase(Phosphotransferase) domain 1 575 763 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00154 Viun-Chr8 993410 996980 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00154 427 730 Receptor kinase-like Gene Family AT4G23230 53.443 7.66e-107 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun8g00154 PK_Tyr_Ser-Thr 2.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00154 - - var:108337036 1395.18