Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00144 ATGGCTGGGTTCTTCTCTCTAGGAGGAAGGCATAACAAAGCGGAGGAAGACGAGGATCACAGAGAAGACAACAACAACAACACCAACAACAGTCAATTTTTGTTCAGAAACGTTAACGACGAGATCTACAACACCAACAAGGGCTTCGAGATATGGCCACAATCCTCGTACCACCACAACTTCACCAACTACTACTCCTTCGGCGTGGGCCCTAGTCGCAGAAACAACACCGCCAACAACAACAACAGCTCCTCCAACAACGTAAACGACGACGTTTCTGTCTCTTTCTCGGATGAGTCCAACCGCTTCGGCTTCACGGTCATGAGGTCCGGAGGCGGCGTGGGTGGCGGCGGAGGAGGCGCCGGCATGAACTGTCAGGACTGTGGCAACCAGGCCAAGAAAGACTGTTCGCACCTCAGATGCAGAACCTGCTGCAAGAGTCGAGGGTTTCAGTGCCAAACCCACGTTAAGAGCACTTGGGTTCCCGCCGCCAAACGCCGTGAACGACAGCAACAACTCGCTGCCTTGCAGCAACAAAATCAACCACCGCAGTTTCGTGGAGATCACTCCAAACGACACAGGGAGAGTATCGAGGGTGTTGCAGCCGGTGGTTCCCTCGCTTGCGCTCCGGTTCCTATCACCACCACAGGGTTGGAGGTGGGTCAATTTCCACCGGAGCTGAACTCGCCAGCGGTGTTCCGGTGCGTGAAAGTGAGTGCAATGGATGCACCGGACGAGCGTTTCGCGTACCAAACCGCAGTGAACATAGGAGGGCACGTGTTCAAGGGAATTCTCTACGATCAAGGAGCGGACGGTCCTTACGCCGGTGCAGGTTGCGAGGGTTCCTCCGGCGGCGGCGGTGAAGCTCGGCCACTCGCTCTCATGGCCGCCGCAACCACCACCACAGCAGCTGGAAACCCTTTTGACGCTTCACTCTACACGGCTCCGATGAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCCCCAAGATCCTAA 999 0.5586 MAGFFSLGGRHNKAEEDEDHREDNNNNTNNSQFLFRNVNDEIYNTNKGFEIWPQSSYHHNFTNYYSFGVGPSRRNNTANNNNSSSNNVNDDVSVSFSDESNRFGFTVMRSGGGVGGGGGGAGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQQQNQPPQFRGDHSKRHRESIEGVAAGGSLACAPVPITTTGLEVGQFPPELNSPAVFRCVKVSAMDAPDERFAYQTAVNIGGHVFKGILYDQGADGPYAGAGCEGSSGGGGEARPLALMAAATTTTAAGNPFDASLYTAPMNAFMAGTQFFPPPRS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00144 332 Pfam Domain of unknown function (DUF702) 122 271 - -
Viun8g00144 332 NCBIfam LRP1 C-terminal domain 222 269 IPR006511 -
Viun8g00144 332 MobiDBLite consensus disorder prediction 1 33 - -
Viun8g00144 332 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 305 IPR007818 GO:0003700|GO:0006355
Viun8g00144 332 MobiDBLite consensus disorder prediction 171 185 - -
Viun8g00144 332 MobiDBLite consensus disorder prediction 171 192 - -
Viun8g00144 332 NCBIfam putative zinc finger domain, LRP1 type 124 166 IPR006510 -
Viun8g00144 332 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00144 Viun-Chr8 936338 938853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00144 1 331 C2H2 Transcription Factor Family AT1G19790 46.154 9.40e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Viun8g00144 DUF702 3.6e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00144 - - gmx:100807290 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00144 8 936338 938853 Viun9g03630 9 41743166 41746070 PCT