Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00126 ATGATGACTTCCGTAGAAGAAAAGCTTAAAACTGTTGGAGTTGGAGCTGGAGCTGGAATGGTTGTTGGGGGTCAAACTTTGGTGGCTGAGATGAAACTGTTGAAAGAAATGCAGGAACATTCTGGGGTCAGAAAGACTTTGAATTCCGAGTTATGGCATGCTTGTGCAGGCCCTCTTGTTTCATTACCTCAGGTTGGAAGTCTTGTGTTTTACTTCCCTCAGGGACACAGTGAGCAGGTGGCGGCTTCTACCAGAAGAACAGCAACGTCGCAGATTCCAAACTACCCGAATCTTCCATCTCAGTTGCTGTGTCAAGTCCAAAATGTCACACTTCATGCAGACAAGGAGACAGATGAAATCTATGCTCAAATGAGTCTGCAGCCACTGAATTCTGAAAAAGAAGCCTTTCCCATATCTGATTTTGGGCTAAAGCCAAGCAAACACCCCACTGAGTTCTTCTGCAAAACTTTGACTGCCAGTGACACCAGCACACATGGCGGCTTTTCGGTTCCACGCAGGGCAGCAGAGAAGCTCTTTCCTCCATTGGATTACACAATTCAACCCCCAACTCAAGAACTTGTTGTTCGAGATTTGCATGATAATACCTGGACATTTAGACATATCTACAGGGGTCAACCAAAGAGACACCTTCTCACAACAGGGTGGAGTTTGTTCGTAGGCTCAAAAAGACTCAGAGCTGGTGATTCTGTTCTTTTCATCAGGGATGAGAAATCGCAACTGCGAGTTGGTGTGAGGCGTGTTAATCGTCAACAAACAACACTGCCATCATCAGTGCTTTCTGCAGATAGCATGCACATTGGTGTGCTTGCTGCTGCAGCTCATGCCGCTGCCAATCGAAGTCCATTCACTATTTTCTACAATCCAAGGGCTTGCCCTTCAGAATTTGTTATTCCGCTGGCTAAATACAGAAAATCTGTATTAGGGACTCAGGTCTCAGTTGGCATGAGATTTGGTATGATGTTTGAGACTGAAGAATCGGGTAAGCGCAGATATATGGGTACAATAGTTGGCATCAGTGATGTGGATCCTCTGAGATGGCCTGGTTCTAGATGGAGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGTGATAAACAGAATAGAGTCAGTGTTTGGGAGATTGAGACTCCTGAAAGCCTTTTTATCTTTCCTTCTTTGACTTCAAGTCTGAAACGGCCATTGCAATCTGGGTTTTACGAAAATGAGTGGGGGACTTTGTTGAGAAGACCTTTTATGAGAGTTCCAGAAAATGGAACTATGGAGGTAGCAAACTCAATGCCAAATCTCTACTCAGAACACCTGATGAAAATGCTTTTCAAACCCCAGATGATTAACAACAATGGAGCATTGTTATCCGCCATGCAACAAGAATCTGCAGCTGCAAGAGGTCCCTTGCAAGAGATGAAGACCACATTTGCAGCAGATAATAACATGCCGCTTAGAAATCTACACTCTCAATCAATCCCTGACCAACCTAATCCCTTAAACATGCAATCACTGTTGAAAAGTGATCAACCTGAAAAGTTGCACACTCTTCCTTCTGGGATAGTCACTGAGAAGCCAAAATTAGAGCCTGAGGTATTAGCACCTGATCATATGCTTGACTATGCTTCCACTTCCATGGAAGGGTGCAACATTGAAAAAGTGGCTACAAATCCTGTTAACCAGCAAGGCCTAGCAAACCAATTGAGTTTCCATAACCAAAACCAGAATCCTCTCACTCAATCTAGTCCATGGCCTATGCAAGCTCAGATAGAATCATCATCCATGCCCCATCCTCAAATGATTGACATGGCTCAAGCTGAAACTGCTATGGTAAATAGCCTTCTTCCTCAGCTAGACATTGATGAATGGATGGCATATGCAAACAGAACAACAACTGGACCTTTACCTGAGTTGCAAGAACATAATTCACTTCAACCTCAAGTGTTGAATCCCCCTTTACCTAACCATGAAGTGTGGGATCATTATGTCAAGAGTTTGAAGTTTTTGTCTCAAACAGACCAGCAGCTAGCCTCCATCTGTCAGCCAGGGACGTTCAATGGCATCAATGGCATGCCAAGTCCAAACAGTCTGAGGGACCTTTCAGCTGAGAGCAACAACAACCAAAGTGAGATTTGTGTCAACGTTGATGTTAGCAACAGTGTAGGTACAACCGTGGTTGATCCTTCCACTTCAAGCACCATTTTGGATGAGTTCTGCACAATGAAGGAGAGAGAGTTTCAGAATCCAAATGATTGCATGGTGGGAAACTTGAGTTCAAGCCAGGATGTGCAATCTCAAATAACCTCTGCAAGTTTAGCTGAGTCACACGCCTTTTCTCTCAGAGACATCCCTGACAACTCTGGTGGCACTTCTTCAAGCCATGTTGATTTTGATGACAACAGCTTTCTGCAGAATAACTCTTGGCAGCAAGTACCTGCTCCCATCCGAACCTACACAAAGGTACAAAAGGCTGGTTCTGTCGGAAGATCAATTGATGTCACTACTTTCAAGAACTATGAGGAGTTGATCCGTGCAATTGAATGCATGTTTGGACTTGATGGTCTTCTGAATGACACCAAAGGTTCTGGATGGAAATTGGTGTATGTAGATTATGAGAGTGATGTTCTGCTAGTTGGGGATGATCCTTGGGAGGAATTTGTGGGGTGTGTTAGGTGCATCAGAATTTTATCACCAACAGAAGTTCAGCAGATGAGTGAAGAGGGAATGAAGCTTCTAAACAGTGGAGCTTTACAAGGGATGAATGTTTGA 2778 0.4417 MMTSVEEKLKTVGVGAGAGMVVGGQTLVAEMKLLKEMQEHSGVRKTLNSELWHACAGPLVSLPQVGSLVFYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMSLQPLNSEKEAFPISDFGLKPSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKSVLGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSRWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSGFYENEWGTLLRRPFMRVPENGTMEVANSMPNLYSEHLMKMLFKPQMINNNGALLSAMQQESAAARGPLQEMKTTFAADNNMPLRNLHSQSIPDQPNPLNMQSLLKSDQPEKLHTLPSGIVTEKPKLEPEVLAPDHMLDYASTSMEGCNIEKVATNPVNQQGLANQLSFHNQNQNPLTQSSPWPMQAQIESSSMPHPQMIDMAQAETAMVNSLLPQLDIDEWMAYANRTTTGPLPELQEHNSLQPQVLNPPLPNHEVWDHYVKSLKFLSQTDQQLASICQPGTFNGINGMPSPNSLRDLSAESNNNQSEICVNVDVSNSVGTTVVDPSTSSTILDEFCTMKEREFQNPNDCMVGNLSSSQDVQSQITSASLAESHAFSLRDIPDNSGGTSSSHVDFDDNSFLQNNSWQQVPAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPTEVQQMSEEGMKLLNSGALQGMNV 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00126 925 FunFam Auxin response factor 815 908 - -
Viun8g00126 925 SUPERFAMILY CAD & PB1 domains 821 898 - -
Viun8g00126 925 Pfam B3 DNA binding domain 153 254 IPR003340 GO:0003677
Viun8g00126 925 Pfam AUX/IAA family 817 905 IPR033389 -
Viun8g00126 925 CDD B3_DNA 152 253 IPR003340 GO:0003677
Viun8g00126 925 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 44 909 IPR044835 GO:0003677|GO:0006355|GO:0009725
Viun8g00126 925 ProSiteProfiles B3 DNA-binding domain profile. 153 255 IPR003340 GO:0003677
Viun8g00126 925 SUPERFAMILY DNA-binding pseudobarrel domain 141 282 IPR015300 -
Viun8g00126 925 FunFam Auxin response factor 317 389 - -
Viun8g00126 925 Gene3D - 317 389 - -
Viun8g00126 925 SMART B3_2 153 255 IPR003340 GO:0003677
Viun8g00126 925 FunFam Auxin response factor 151 255 - -
Viun8g00126 925 Gene3D - 816 908 - -
Viun8g00126 925 Pfam Auxin response factor 279 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun8g00126 925 Gene3D - 150 254 IPR015300 -
Viun8g00126 925 ProSiteProfiles PB1 domain profile. 819 903 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00126 Viun-Chr8 783541 788381 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00126 26 923 B3 DNA Binding Superfamily AT1G19850 59.422 0.0 996
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun8g00126 AUX_IAA 3.1e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00126 K14486 - gmx:100813003 1627.07