Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00104 ATGTCGTTAAGCAAGTTTTTCGATTGGAACACTGTTCAAATCTCCGATTCAGAAGAAGCAAGCCTCCTTAACGAAGCCATGGCAGAAGAACCAAATATCCAGCACCTGTTTCCATACTCAGATGAAAGCTTTTTCCTTTCAAACGCGCTTTTTGAGTACACCATTGACCCAAACGGTGGTTTTCTCTGTCCTTCAGATATTCACTCTCCTTTTGATCCTTTTGATCCTTTCACTTCACTCCCTCATCATCAAATCTTCCCAACTCATGAAGAATATTACGATCCTCTCCCAAAACGCCAAAAGTTCTTCTGCGACGAACAACAAGAGCTTTCACCACCAGAAGGGTTTGTTAATGGCTACTCTTTTCAACCAGAAGAGACACAACAACAACAACAGCAGTTATTTTCTATGGATAATCAATGCGAGGAGAAGGGTAATAAAGAGAGAACCATATCTCCACAGAGTGTAGCCGCAAGAGAAAGAAGAAGAAAGATTACGAATAAGACACAAGAGCTTGGTAAGTTGGTGCCTGGTGGAACCAAAATGAACACTGCTGAGATGCTTCATGCAGCTGCAAAGTATGTTAAGTACCTCCAAGTTCAAGTTGAAATGCTTGAACTCATGAACTCATTAGAGCATGAAGATAAAGCAGCACCTCCTTCTGAAATTCTACACGGTCTGGTTGTTTCTCCCTTTGTTCAAGAGAAGTTGTATGCGGGGGAAAAGTGCTTTTTGCCAAAAGAAACTGTCACAACTTTGACAGATCTTGAAGTTGTTCGATCAAAACCTACCATGGTTGAGGAACTTAAACAGCTCATTGGAACAGACATTGAGAAAGAGAAGCAAGAATAA 852 0.4108 MSLSKFFDWNTVQISDSEEASLLNEAMAEEPNIQHLFPYSDESFFLSNALFEYTIDPNGGFLCPSDIHSPFDPFDPFTSLPHHQIFPTHEEYYDPLPKRQKFFCDEQQELSPPEGFVNGYSFQPEETQQQQQQLFSMDNQCEEKGNKERTISPQSVAARERRRKITNKTQELGKLVPGGTKMNTAEMLHAAAKYVKYLQVQVEMLELMNSLEHEDKAAPPSEILHGLVVSPFVQEKLYAGEKCFLPKETVTTLTDLEVVRSKPTMVEELKQLIGTDIEKEKQE 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00104 283 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Viun8g00104 283 Gene3D - 145 218 IPR036638 GO:0046983
Viun8g00104 283 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 146 209 IPR036638 GO:0046983
Viun8g00104 283 Pfam Helix-loop-helix DNA-binding domain 159 199 IPR011598 GO:0046983
Viun8g00104 283 SMART finulus 155 204 IPR011598 GO:0046983
Viun8g00104 283 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 145 234 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00104 Viun-Chr8 607582 608579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00104 141 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 43.066 3.51e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun8g00104 HLH 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00104 - - pvu:PHAVU_001G006100g 371.318