Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00102 ATGGCTGAAGTGGAACTCGTTCCTCCACAAGGCGTGCCACCTAAAACCGACCAACAAACCAAAACTGAGAGTGTGTCGTTTTTTGGCTTGTTTGCTACAGCTGATTCAACTGACTGTGTCTTAATGTTCCTCGGAAGTGTCGGTTCTTGTCTCCATGGTGCTGCTCTTCCTGTTTTCTTCATTTTGTTTGGTCGCATGATCGACTCTTTGGGACATCTTTCTAACAATCCTCACAAATTGTCCTCCAGAGTTTCTGAGCATGCTTTGTATTTGGTCTACCTTGGTGGAGTTGTTCTGGTATCTGCTTGGATGGGAGTAGCGTTCTGGATGCAAACAGGGGAGAGGCAAACGGCACGTTTGCGTTTGAAGTATTTGCTGGCAGTGCTGAAGAAGGATATTAGTTTCTTTGACAACGAAGCCAGGGATGCCAATATCATTTTCCACATCTCAAGTGATGCAATACTGGTACAAGATGCTATTGGTGACAAGACAGGGCACGCCATTCGTTACCTCTCTCAATTCATCGTTGGATTTGCCATTGGATTTACCTCAGTGTGGCAGCTCACACTACTCACCTTGGCTGTGGTTCCACTTATAGCTCTAGCAGGGGGAGCTTATACAATAATCATGTCTACTTTATCAGAAAAGGGTGAAGCAGCTTATGCTGAGGCTGGGAAGGTTGCAGAAGAGGTGATTTCTCAAGTGCGTACTGTTTACTCATTTGTAGGAGAAGAGAAAGCAATTGGTTCATACTCAAAGTCTCTTGATAATGCTCTGAAACTGGGCAAGAAGGGTGGTGTGGCAAAAGGAGTTGGAGTAGGCTTCACATATGGCTTGTTATTTTGTGCTTGGGCATTGCTTCTATGGTATGCTGGCATACTTGTGAGGCATCACAAGACAAATGGAGGAAAAGCCTTCACAACAATAATCAATGTCATCTTTAGTGGATTTGCTCTTGGTCAAGCTGCTCCAAATCTTGGTTCCATTGCAAAAGGGCGTGCTGCTGCAGCCAACATCATGAACATGATTGCGTCGGCTTCAAGCAATTCTAAAAAGTTGGATGATGGCAATGTTGTGCCACTGGTTGCTGGGGAAATTGAATTTCATGAGGTCTGTTTTTCGTACCCCTCAAGAACCAACATGATCTTTGAAAAATTGAGCTTCTCAGTGAGTGCTGGCAAGACTATAGCAGTTGTTGGTCCCAGTGGTTCAGGAAAGAGCACGATTGTTTCACTTATTCAACGGTTCTATGACCCCACTTCAGGTAAGATCCTGTTGGATGGATATGACCTAAAGAATCTTCAATTGAAATGGTTGAGAGAACAGATGGGCTTGGTTAGTCAAGAACCAGCACTATTTGCAACAACAATAGCTGGAAATATCTTATTTGGAAAAGAAGATGCAGACATGGATAAAGTCATACAAGCTTCCATGGCTGCAAATGCTCATTCTTTTATTCAAGGATTGCCTGATGGTTATCAAACTCAGGTTGGAGAGGGTGGCACCCAACTTTCAGGGGGGCAGAAGCAAAGAATTGCCATTGCAAGAGCAGTGATCAGAAATCCAAAACTATTGCTTCTAGACGAGGCCACAAGTGCTCTAGATTCTGAATCAGAACTCATTGTCCAACAGGCATTGGAAAAAATAATGTCAAACAGAACAACAATAATTGTTGCTCATAGATTATCCACTATACGAGATGTAGATACAATCATTGTGTTGAAGAACGGCCAGGTGGTTGAAAGTGGAACTCATCTGGAATTGATGTCCAAAAATGGAGAGTATGTGAATCTGGTGAGTTTGCAGGCATCACAGAACCTCTCAAACTCTAGATCAATATCTCGCTCTGAAAGTTCAAGAAATTCTAGTTTTAGAGAACCTGCAGAGAACATGACCTTAGAGGAACAACTGATGTTGGACACTAGAGGAGAATTGGAATCAAGTGATCAACACTTGCCATCAAAGACAACTTCAGCTCCAACAATTTTGGATTTACTGAAACTGAATGCTCCAGAATGGCCCTATGCAATATTTGGGTCGGTAGGTGCAATATTGGCTGGCATGGAAGCCCCTCTCTTTGCACTTGGAATCACTCACATTTTGACTGCATTTTATTCTCCTCAGAGTTCTAAAATCAAGCAAGAAGTAGATCGTGTAGCTTTGATATTTCTTGGAGTGGCTGTTATTACTGTACCTATTTATCTATTGCTTCACTACTTTTATACATTGATGGGAGAACATCTCACTGCCCGTGTACGTTTATTAATGTTCTCAGCTATTCTCAACAATGAAGTTGCATGGTTTGATAAAGATGAGAACAACACTGGCTCACTGACAGCCATGCTAGCTGCGGATGCAACACTAGTGAGAAGTGCTCTAGCTGATAGACTCTCAACCATTGTGCAAAATGTAGCCCTCACTGTCACAGCTTTTGTTATTGGCTTCACATTGAGTTGGAAACTAACAGCAGTGGTTGTAGCATGCCTTCCCCTTCTCATAGGAGCTTCTATCACTGAGCAATTATTTCTGAAGGGGTTTGGAGGAGATTACAGCCATGCTTACTCTAAGGCAACTTCTTTGGCTCGTGAAGCTATTGCCAACATACGAACTGTTGCTGCGTTTGGCGCCGAAGATCGAATCTCAATCCGGTTTGCATCTGAATTGAACAAACCTAACAAACAAGCTCTTCTACGGGGCCACATATCAGGTTTTGGCTATGGCATAACCCAGCTATTGGCTTTCTGTTCCTATGCACTTGGCCTTTGGTATGCATCAGTTTTAATCAAGAAGAAAGAGTCAAATTTTGGAGACATCATGAAGTCCTTCATGGTCTTAATCATCACTTCTCTGGCAATAGCAGAAACACTAGCTCTTACCCCAGACATTGTGAAGGGATCACAGGCACTGGGATCGGTTTTCGGCATTCTCCAAAGGAGAACATCCATCACCCCAGATGATCCCAACTCAAAGATTGTAACTGTTGTCAAAGGAGAGATAGAGTTTAGAAACGTAAGCTTCAAGTACCCTATGAGACCCGACATCACCATATTTCAGAACTTGAATCTCAGAGTCTCAGCAGGGAAGAGTCTGGCAGTAGTGGGCCAAAGTGGTTCAGGGAAAAGCACAGTGATTTCATTGGTAATGAGGTTTTATGACCCTGATTCTGGATCAGTCCTCATAGATGAATGTGACATCAAAACCCTAAACCTGAGATCCTTAAGGCTGAGAATAGGATTGGTTCAGCAAGAACCTGCTTTGTTCTCAACCACAGTTTATGAAAACATCAAGTATGGGAAAGAGGAGGCATCAGAAATAGAGGTGATGAAGGCAGCGAAAGCAGCAAATGCTCATGAATTCATCAGCAGAATGCCTGAAGGGTACGAAACTGAGGTGGGTGAGAGAGGGGTGCAGTTGTCAGGGGGACAAAAACAGAGAGTTGCAATTGCTAGAGCTATTTTGAAAGATCCATCAATTCTTTTGTTGGATGAAGCCACAAGTGCTTTGGACACAGTATCAGAGAGGCTGGTCCAAGAGGCTCTGGATAAACTAATGGAAGGTAGAACAACAATTTTGGTAGCTCACAGGCTATCAACTGTTCGTGACGCTGACAGCATTGTAGTGCTGCAAAATGGCAGTGTTGCCGAAATGGGAAGCCATGAGAGGCTCATGGCCAAACCTAGAAGCATCTATAAGCAATTGGTTAGTCTACAGCATGAATCGCTTGACCAAGAAAAACATTGA 3741 0.4325 MAEVELVPPQGVPPKTDQQTKTESVSFFGLFATADSTDCVLMFLGSVGSCLHGAALPVFFILFGRMIDSLGHLSNNPHKLSSRVSEHALYLVYLGGVVLVSAWMGVAFWMQTGERQTARLRLKYLLAVLKKDISFFDNEARDANIIFHISSDAILVQDAIGDKTGHAIRYLSQFIVGFAIGFTSVWQLTLLTLAVVPLIALAGGAYTIIMSTLSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEEKAIGSYSKSLDNALKLGKKGGVAKGVGVGFTYGLLFCAWALLLWYAGILVRHHKTNGGKAFTTIINVIFSGFALGQAAPNLGSIAKGRAAAANIMNMIASASSNSKKLDDGNVVPLVAGEIEFHEVCFSYPSRTNMIFEKLSFSVSAGKTIAVVGPSGSGKSTIVSLIQRFYDPTSGKILLDGYDLKNLQLKWLREQMGLVSQEPALFATTIAGNILFGKEDADMDKVIQASMAANAHSFIQGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVIRNPKLLLLDEATSALDSESELIVQQALEKIMSNRTTIIVAHRLSTIRDVDTIIVLKNGQVVESGTHLELMSKNGEYVNLVSLQASQNLSNSRSISRSESSRNSSFREPAENMTLEEQLMLDTRGELESSDQHLPSKTTSAPTILDLLKLNAPEWPYAIFGSVGAILAGMEAPLFALGITHILTAFYSPQSSKIKQEVDRVALIFLGVAVITVPIYLLLHYFYTLMGEHLTARVRLLMFSAILNNEVAWFDKDENNTGSLTAMLAADATLVRSALADRLSTIVQNVALTVTAFVIGFTLSWKLTAVVVACLPLLIGASITEQLFLKGFGGDYSHAYSKATSLAREAIANIRTVAAFGAEDRISIRFASELNKPNKQALLRGHISGFGYGITQLLAFCSYALGLWYASVLIKKKESNFGDIMKSFMVLIITSLAIAETLALTPDIVKGSQALGSVFGILQRRTSITPDDPNSKIVTVVKGEIEFRNVSFKYPMRPDITIFQNLNLRVSAGKSLAVVGQSGSGKSTVISLVMRFYDPDSGSVLIDECDIKTLNLRSLRLRIGLVQQEPALFSTTVYENIKYGKEEASEIEVMKAAKAANAHEFISRMPEGYETEVGERGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDTVSERLVQEALDKLMEGRTTILVAHRLSTVRDADSIVVLQNGSVAEMGSHERLMAKPRSIYKQLVSLQHESLDQEKH 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00102 1246 Pfam ABC transporter 1018 1166 IPR003439 GO:0005524
Viun8g00102 1246 Pfam ABC transporter transmembrane region 679 950 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun8g00102 1246 Pfam ABC transporter transmembrane region 43 315 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun8g00102 1246 PANTHER ABC TRANSPORTER B FAMILY 16 731 IPR039421 -
Viun8g00102 1246 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 43 331 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun8g00102 1246 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 366 601 IPR003439 GO:0005524
Viun8g00102 1246 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 677 964 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun8g00102 1246 CDD ABC_6TM_Pgp_ABCB1_D2_like 666 982 - -
Viun8g00102 1246 SMART AAA_5 392 578 IPR003593 GO:0016887
Viun8g00102 1246 SMART AAA_5 1026 1212 IPR003593 GO:0016887
Viun8g00102 1246 FunFam ABC transporter B family member 4 989 1244 - -
Viun8g00102 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 988 1237 IPR027417 -
Viun8g00102 1246 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524|GO:0016887
Viun8g00102 1246 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 999 1235 IPR003439 GO:0005524
Viun8g00102 1246 Gene3D ABC transporter type 1, transmembrane domain 15 344 IPR036640 GO:0005524|GO:0016020
Viun8g00102 1246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 602 IPR027417 -
Viun8g00102 1246 CDD ABC_MTABC3_MDL1_MDL2 366 602 - -
Viun8g00102 1246 Gene3D - 359 612 IPR027417 -
Viun8g00102 1246 CDD ABC_MTABC3_MDL1_MDL2 999 1237 - -
Viun8g00102 1246 SUPERFAMILY ABC transporter transmembrane region 38 339 IPR036640 GO:0005524|GO:0016020
Viun8g00102 1246 FunFam ABC transporter B family member 4 356 610 - -
Viun8g00102 1246 Gene3D - 997 1240 IPR027417 -
Viun8g00102 1246 Pfam ABC transporter 384 532 IPR003439 GO:0005524
Viun8g00102 1246 SUPERFAMILY ABC transporter transmembrane region 665 977 IPR036640 GO:0005524|GO:0016020
Viun8g00102 1246 ProSitePatterns ABC transporters family signature. 1138 1152 IPR017871 GO:0005524|GO:0016887
Viun8g00102 1246 Gene3D ABC transporter type 1, transmembrane domain 852 996 IPR036640 GO:0005524|GO:0016020
Viun8g00102 1246 Gene3D ABC transporter type 1, transmembrane domain 619 847 IPR036640 GO:0005524|GO:0016020
Viun8g00102 1246 CDD ABC_6TM_Pgp_ABCB1_D1_like 42 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00102 Viun-Chr8 588106 593791 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00102 8 1238 Calmodulin-binding Proteins AT2G36910 49.602 0.0 1212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00102 K05658 - gmx:100787093 2199.86