Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00099 ATGACTCTTGAAGATTTCTTTACGTTGACTGAAATGAAAGATGGCCTCACGGCCCCTTCCCGAGTGCAAGAGTTAGTCTCTGTAATGAAGAAGGAGCAAGATTGTGTCGTTAAAAATGCTGGTGATGCGACAAGGCAGTGGGCTGCTGTTGCAAGCACTATTGCTGCTACAGAGAATAAAGATTGTCTTGATCTTTTTGTTCAATTAGATGGACTTTGGTTCATAAACAGATGGTTAAAGGATGCGCAAAATTTGGGTGCTGATAATACAAATGATGGCTTCATTGAAGAATCAATAACTGCAATGTTACGAGCAGTTGAAAAACTATATCTAGACAGCGAAAAGTCAATTTCATCTGGAATTTCGGTCACTGTTAATAACCTTCTTGGCCATCACAGCTCTAAAGTGCAGGATAGAGCAAGAGCATTATTTGACCTATGGAAAGGAGGTGGACTTGGAGATGCTGAACCTCATGATAATTCAGATCGAGATAGACTCAACAATGAGAGTGATAAGATTGCCAGGGAGGAAGGCCAGCCATCTTGTGTGAACGATGCTGGCAATGACAATCATCATGCATCTCAACTTGCTGGAGATGAGAAGTCTCTATTGGGAGGCTCAAATAGTCAGCTACAAGAGAAAGTTACTAGTAGTCAGACACAGAGTGTTGATAATGCACTCCAGTCCTCTGTAAGTTTGGACTGTGAAGATGTCAAAGAGAGATCAAGCCATGTTGATAGTGTTTTGGCTTCTGCTCAAGAAGCTACCGTAAGTGAATGTGAGACCACATTGGCTGGGACCTGTAGCTTACCTATTACTAAACAAGGCAGTTTCAAAGGACAGCAAGATGATTTACAGTTGAATGACTTGTCCAAAAAGGAAAAACAAGATCAAGATGTTAATGGTCCTCCTGAAGAATTAAAATCAGCAGATATCTCTTCCGCATCCGCAAAGCCAGATCCTGAACCTGTTTCCACTGGCAATACTGAAGCAAAAGCACTGGAATCTGTGAAAGAAGAACCTGCTTTAGAACATAATGTGGAAAGCAATGAAAATGTTGTTTGTCCAAAAATAAGTGTTTCTGGTAGCATGAGAACGCCTGAATCTGATGGAATGAGTGAGATGGATGATTTCAGAGCCACAAGTTCTAGCAATCCACAGCTTCCCAAAGCATCAGAAAATGATGATGACAGTTGTTCAAGAATGTTGCCTGACTTATCTGTCACTGGAAGTAACTTGGAAAAAACTGACATGTCTTTCACCAAATCAGAATACATCAGAGCAGTAAAGGAAAACAAGGACCAAGAGTCTGATCAAGATGATGATACTTCAAATGGTTCTGATTCTTTTAATCAGGGCAAAGGTCCCAGAAGCCCTAACATTATTGACAAGAGTTCTGACATGGAAGTTGAATATGGTAATGTTGATGCTTTAGAAGTTGCTCGACTAGTTGCCCAAGAAGTTGAGAGAGAATGTGTCAGCCCTGTAAAGGAAGGGAATGACCATGGTTCTAATTGTACCACAAATGGTTCTGATTCTTTTAAATGGCGAAATCGTCCCAAAAGCCCTAATGTTATTGGCAAGAGTTGTGAAATTGAGCTCGAGTATGGCATGGTTGATGCTTTAGAAGTTGCCCGACAAGTTGCTCAGGAGGTTGAGAGAGAAGTTTCCAGCTCTTCAGAGAAAATCTCTGAAGGTGGAATTAGGCGGAGAGGCAGCCTTGATTCTTTAGGGAGAAAGGATGAGGTCACTCGTATCCTGCCTGAGGAAGTATCATCCAGGCAAAGCAACTCAGCTGAAGTGTGTTCGGAAGAGGTAGGACATATGACAGATTTAGATAATGTTGAGGCCGGGCCAGATGACATGGACTCCTCGCAGGTGACTGAAGCAGCTCGTGACCCAGGAGGTAGTTCGGAGAAAAGTCTTTGTACCTTTGATCTCAATGAAGATGTTGGATCTGATGATATGGATGTTTCTGTAAATGCCATGCCTACTATGCCAATACCTGTTGTCTCTGCTTCAAAACCTGCACAGTCTTCTGGGTTACCAATGGCCCCTTTGCAGTTTGAGGGGACCCACGGATGGAAAGGATCAGCTGCTACCAGTGCCTTTCGTCCTGCATCACCTCGTAAAAATTCTGATAGCGAGAAGAATGTTTCTGTTGGTAGAAGCTCTGAGCTTTCCAAGGAGAGGCATTGTTTCCTGGATTTTGATCTGAATGTGGCTGAAGGTGAAGAAGGATTGGTAAAACAAATTGGTGAATCTTCAGGCCTTCCTTCTGGCCAATCATCTGTGGAACTTAGTCCTAAAAGATCAAACAAGGTCGAATTGGATTTAAACAGTATTGGTGATGATGATGTCCAACCTTCAAATCAGAGGATCGAGGGCCCACCCTTTTCTGGAAGAAATGGTTATTGGAGCCCATCACCTGCTTCTTCATCGTCATCAATGCAACCTTCAGTACGGAACATTGATTTGAATGACAGACCATACTTTCAAACAGATTTAGTGGACCAAGGGCATAGTAAGTCATCTTCGATTACCGAAGCATATAAACGGTCTAAACCGGGTGCTCCTGTTATCTCTATTTTGGGTGCCAAGGTGGAAGTTGGTAGAAGAGAATATGTTCCTCAAACCTTGTCGCTACCAAATGGCAAGGCTATTGAGCCAGCAATGGATCTTCCATTATCAGGAGCAGGTGGCATTTTAGGAATGGGCCCCCCACTATCCTACAATCATTCAAATGCATTTGGGTATAATGGACTGACATCAGTGCCTGCTTTGTCTTTTTCGTCAGCCATGTACGGACCCTCTGGTGGCCCAGTTCCGTACATGGTAGACTCGAGAGGAACTCCAGTTGTGGCTCAGGTTGGGGGATCTTCGTCTACCGTCCTCTCATCTTATACTCAGCCTCCATTTATCGTAAGCATGACCGGAACGCAGCTTGGTTTAAATGGCGTTGGATCTTCACATCCCAACTTTGATCTAAACTCCGGCTTCACGATTGATGGCCCCAACAGAGACATGTTGACTGCAAGGCAATTTTTCTTTCCTGCTCAAGGCAGAGCTATTGAGGAGCATGTAAGGACCCTTCCACAGTCCTCTAATTCTGGGGTTAGTCTGAAAAGAAAGGAACCAGACGGTGGTGCCTGGGAAACCTATCCGCGTAGCTACAAACATCAGCAACCGCCATGGAAATAG 3201 0.4367 MTLEDFFTLTEMKDGLTAPSRVQELVSVMKKEQDCVVKNAGDATRQWAAVASTIAATENKDCLDLFVQLDGLWFINRWLKDAQNLGADNTNDGFIEESITAMLRAVEKLYLDSEKSISSGISVTVNNLLGHHSSKVQDRARALFDLWKGGGLGDAEPHDNSDRDRLNNESDKIAREEGQPSCVNDAGNDNHHASQLAGDEKSLLGGSNSQLQEKVTSSQTQSVDNALQSSVSLDCEDVKERSSHVDSVLASAQEATVSECETTLAGTCSLPITKQGSFKGQQDDLQLNDLSKKEKQDQDVNGPPEELKSADISSASAKPDPEPVSTGNTEAKALESVKEEPALEHNVESNENVVCPKISVSGSMRTPESDGMSEMDDFRATSSSNPQLPKASENDDDSCSRMLPDLSVTGSNLEKTDMSFTKSEYIRAVKENKDQESDQDDDTSNGSDSFNQGKGPRSPNIIDKSSDMEVEYGNVDALEVARLVAQEVERECVSPVKEGNDHGSNCTTNGSDSFKWRNRPKSPNVIGKSCEIELEYGMVDALEVARQVAQEVEREVSSSSEKISEGGIRRRGSLDSLGRKDEVTRILPEEVSSRQSNSAEVCSEEVGHMTDLDNVEAGPDDMDSSQVTEAARDPGGSSEKSLCTFDLNEDVGSDDMDVSVNAMPTMPIPVVSASKPAQSSGLPMAPLQFEGTHGWKGSAATSAFRPASPRKNSDSEKNVSVGRSSELSKERHCFLDFDLNVAEGEEGLVKQIGESSGLPSGQSSVELSPKRSNKVELDLNSIGDDDVQPSNQRIEGPPFSGRNGYWSPSPASSSSSMQPSVRNIDLNDRPYFQTDLVDQGHSKSSSITEAYKRSKPGAPVISILGAKVEVGRREYVPQTLSLPNGKAIEPAMDLPLSGAGGILGMGPPLSYNHSNAFGYNGLTSVPALSFSSAMYGPSGGPVPYMVDSRGTPVVAQVGGSSSTVLSSYTQPPFIVSMTGTQLGLNGVGSSHPNFDLNSGFTIDGPNRDMLTARQFFFPAQGRAIEEHVRTLPQSSNSGVSLKRKEPDGGAWETYPRSYKHQQPPWK 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00099 1066 MobiDBLite consensus disorder prediction 376 393 - -
Viun8g00099 1066 MobiDBLite consensus disorder prediction 612 643 - -
Viun8g00099 1066 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 500 1066 - -
Viun8g00099 1066 MobiDBLite consensus disorder prediction 1030 1066 - -
Viun8g00099 1066 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 158 IPR035441 -
Viun8g00099 1066 MobiDBLite consensus disorder prediction 755 770 - -
Viun8g00099 1066 MobiDBLite consensus disorder prediction 805 823 - -
Viun8g00099 1066 MobiDBLite consensus disorder prediction 694 725 - -
Viun8g00099 1066 MobiDBLite consensus disorder prediction 352 368 - -
Viun8g00099 1066 MobiDBLite consensus disorder prediction 496 520 - -
Viun8g00099 1066 Coils Coil 542 562 - -
Viun8g00099 1066 MobiDBLite consensus disorder prediction 201 225 - -
Viun8g00099 1066 MobiDBLite consensus disorder prediction 752 823 - -
Viun8g00099 1066 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 17 150 IPR035441 -
Viun8g00099 1066 MobiDBLite consensus disorder prediction 404 419 - -
Viun8g00099 1066 MobiDBLite consensus disorder prediction 555 575 - -
Viun8g00099 1066 ProSiteProfiles TFIIS N-terminal domain profile. 73 154 IPR017923 -
Viun8g00099 1066 MobiDBLite consensus disorder prediction 173 225 - -
Viun8g00099 1066 MobiDBLite consensus disorder prediction 444 459 - -
Viun8g00099 1066 MobiDBLite consensus disorder prediction 705 722 - -
Viun8g00099 1066 MobiDBLite consensus disorder prediction 292 464 - -
Viun8g00099 1066 MobiDBLite consensus disorder prediction 500 518 - -
Viun8g00099 1066 MobiDBLite consensus disorder prediction 420 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00099 Viun-Chr8 564869 572089 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Viun8g00099 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00099 - - gmx:102667261 1669.83