Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00069 ATGAGTGAAGACGTGGAAATGAAAGATCAGGCAACGCCTTCACAGTCGGTTTCTTCAGCTCTTCCATCTGCATTGCAGCATTTGAAGGGAATATCATCAATCATTGAAAGCGGTTCGTACTCAAAGGAAGTTCGTCGGATTGCTCGTGCCCTGCGCCTTACATTTGCGTTGAGACGTAAACTTACGGCACCGCTCCTCTCATCTTTTCTTGATTACGTTCTCGTGCCCGCTTCTGAACTTCACGCGAAGTTATCCTCTTATCTTCCTAGTCCCAAGGAGGGTGATCGAGAGATGGAAGTGGACAGTGCAACATCTGCCATTCAAAACCCGGTGGCCAAGCACTTGTTGCCTGAGCTAGAAATCTACTGTTACCTCCTTGTCCTACTTTTTCTAATTGACCAGAAAAGATATGATGCAGCCAAAGCTTGTTCCTCAGCTAGCATTGTTCGGCTGAAGAGCTTGAATAGAAGAACTGTCGATGTTATTGCGTCTAGACTGTACTTTTATTACTCGTATAGCTATGAGCTTGCGGGAGATCTTGCTGAAATTAGAGGCAACCTCCTTGCATTGCATCGGATTGCTACCCTGCGCCATGACGAGCTGGGTCAGGAAACACTTCTTAATCTGTTACTTCGTAACTACCTACACTACAACCTATATGATCAGGCAGAGAAATTGAGGTCCAAAGCTCCACGTTTTGAGGCCCATTCAAATCAGCAGTTTTGTCGATATCTCTTCTACCTAGGAAAAATTCGGACAATTCAGCTGGAGTATACCGATGCAAAAGAGTCTCTCCTGCAGGCTGCTCGTAAAGCTCCCAGTGCAGCACGAGGTTTTCGAATTCAATGTAACAAGTGGGCTCTGATAGTGCGTTTATTATTGGGAGAAGTACCTGAGAGGAATGTCTTTATGCAGAGAGGAATGGAGAAAGCTTTGAGACCTTACTTTGAGCTTACAAATGCTGTTCGGATTGGTGACTTGGACTTGTTTATGAATGTTGCGGAGAAGTTTGGTACAACTTTCAATAGAGATGGAACTCATAATTTGATTGTTCGGCTGCGCCATAATGTCATCAGGACTGGTTTACGCAACATCAGCATATCATATTCGCGCATATCGCTAGCTGATGTAGCTAAAAAGTTGAGGTTGAACTCTGCTAATCCTGTTGCTGATGCTGAGAGCATTGTAGCAAAGGCCATCCGTGATGGGGCTGTTGAGGCTTCATTGGATCATGCTGATGGGTGGATGGTATCGAAGGAAACTGGAGATATTTACTCTACAAATGAGCCTCAGTTTGCATTTAATTCTCGGATTGCCTTTTGTCTTAACATGCACAATGAGGCTGTTCGAGCACTGCGTTTTCCGCCAAACACCCACAAGGAAAAGGAAAGTGCCGAGAAGAGGAGAGAAAGACATCAACAAGAGCAAGAATTAGCTAAGCATATCGAAGAGGAAGATGATGATGACTTCTGA 1473 0.4467 MSEDVEMKDQATPSQSVSSALPSALQHLKGISSIIESGSYSKEVRRIARALRLTFALRRKLTAPLLSSFLDYVLVPASELHAKLSSYLPSPKEGDREMEVDSATSAIQNPVAKHLLPELEIYCYLLVLLFLIDQKRYDAAKACSSASIVRLKSLNRRTVDVIASRLYFYYSYSYELAGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPSAARGFRIQCNKWALIVRLLLGEVPERNVFMQRGMEKALRPYFELTNAVRIGDLDLFMNVAEKFGTTFNRDGTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSANPVADAESIVAKAIRDGAVEASLDHADGWMVSKETGDIYSTNEPQFAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERHQQEQELAKHIEEEDDDDF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00069 490 SUPERFAMILY "Winged helix" DNA-binding domain 349 424 IPR036390 -
Viun8g00069 490 Gene3D - 234 420 - -
Viun8g00069 490 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 348 441 IPR000717 -
Viun8g00069 490 FunFam 26S proteasome non-ATPase regulatory subunit 3 123 446 - -
Viun8g00069 490 MobiDBLite consensus disorder prediction 455 480 - -
Viun8g00069 490 Pfam Proteasome regulatory subunit C-terminal 423 489 IPR013586 GO:0000502|GO:0030234|GO:0042176
Viun8g00069 490 MobiDBLite consensus disorder prediction 455 490 - -
Viun8g00069 490 Coils Coil 457 485 - -
Viun8g00069 490 ProSiteProfiles PCI domain profile. 242 423 IPR000717 -
Viun8g00069 490 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 4 481 - -
Viun8g00069 490 SMART PCI/PINT associated module 177 348 - -
Viun8g00069 490 Pfam PCI domain 314 419 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00069 Viun-Chr8 323685 328408 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00069 K03033 - gmx:100819526 838.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00069 8 323685 328408 Viun8g00069 8 323685 328408 ECH
Viun8g00069 8 323685 328408 Viun9g03705 9 42223350 42226585 PCT