Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00067 ATGCTCGACTCCGTTCTGCTGGCGCTGTTCTTGCCATGCCTTGGCATGACCGCCGTTTTCATCGTTTACATGTGTCTTCTATGGTACGCCACCACTCACCACACCGATCCCCCGCTACCGGCGAAGCCCGTCTCCGACGGCGGCCTCTCGCCGTCGCAGCTCCAGAAGCTTCCCTCGATCACCGGGAAAGACCTTCTCACGGGCTCCGAATGCGCCGTCTGTCTCGACGACATCGCCAGCGACCAACCCGCTCGACTGGTTCCCGGTTGCAACCACGCCTTCCACGTGGAATGCGCTGACACCTGGCTCTCCAAGCACCCTCTCTGCCCTCTCTGCAGAGCCAAACTCGACCCCACCGCGCTTTTCTCTTCCGAAGAAAATCCTTGCTGA 390 0.6077 MLDSVLLALFLPCLGMTAVFIVYMCLLWYATTHHTDPPLPAKPVSDGGLSPSQLQKLPSITGKDLLTGSECAVCLDDIASDQPARLVPGCNHAFHVECADTWLSKHPLCPLCRAKLDPTALFSSEENPC 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00067 129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 119 IPR013083 -
Viun8g00067 129 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Viun8g00067 129 Pfam Ring finger domain 70 113 IPR001841 -
Viun8g00067 129 SUPERFAMILY RING/U-box 63 118 - -
Viun8g00067 129 SMART ring_2 71 112 IPR001841 -
Viun8g00067 129 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00067 Viun-Chr8 309619 310518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00067 1 119 C3H Transcription Factor Family AT5G42200 51.200 1.21e-41 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00067 K19037 - gmx:100817919 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00067 8 309619 310518 Viun8g00067 8 309619 310518 ECH
Viun8g00067 8 309619 310518 Viun9g03707 9 42239799 42240617 PCT