Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00065 ATGGGGCACTGCTTCAGCAAACCCCGCAGCAACGAAATAGCAATCAACTATGATTCACCACCCCATCATCGTTACGAGCCTCGTCCACACCCTCGACCACGAAGACCTCAAAACCAGCCTCATCTTCGACCTCGTTATCCCTACTCTGCTCCAAACTCGGACCCTTCTCTTTCCATCGGCCCTTCATCATCATTCGGAGATCAGTCACGGATTCTGGATAAACCGTACTTCGACATGAAAACGCTTTACGCGGTGGAGAGGGAACTGGGGAGGGGTCAATTCGGGATCACTCGTCTTTGCACCGAGAAGACCACCGGAAGGAAATATGCCTGCAAGTCCATTCCAAAGCGGAGGCTAACAAAAAAGAAGCAAATCGATGATGTGAAGAGGGAGATTCTGATCCTTCAGCACCTCTCGGGTCAACCCAACATCGTGGAGTTCAAGGGTGCTTACGAGGATTGGCAGAATGTGCATTTGGTGATGGAGTTGTGTCTGGGTGGCGAGCTTTTCGATCGCATCACTGCAAAGGGTAGTTACTCCGAGAGTGAAGCTGCTTCCATATTCCGACAAATCGTGAATGTGGTTCATGCATGTCACTTTATGGGGGTCATGCATAGAGACCTTAAGCCAGAAAACTTCTTGCTTGTTAGTAAGGATCCTAAGGCACCCTTGAAAGCCACCGATTTTGGATTGTCCGTCTTCATTGAAGAAGATAAAGTGTACAAGGAGATTGTTGGAAGTGCTTACTATGTGGCTCCAGAGGTGTTAAAGAGGAGTTATGGAAAAGAAATAGATGTGTGGAGTGCGGGAATAATTTTATACATCCTTCTAAGTGGAGTTCCTCCATTTTGGGCTGAAAGCGAGAAGGGTATATTTGATGCAATTTTGGAAGGAAAGCTTGATCTGGAGAGCGCACCATGGCCTTCTATCTCAGCTGCTGCAAAGGATTTGATCAGGAAAATGTTGAACCATGACCCCAAGAAACGCATTACAGCTGCTGAAGCCCTTGAACACCCGTGGATGAAGGAGGGTGGTGAAGCATCTGACAAGCCTATAGACAATGCTGTTTTAACTAGGATGAAACAGTTCAGAGCAATGAACAAGATGAAGAAACTTGCTCTCAAGGTTATAGCAGAAAACCTTTCAGAGGAGGAAATCAAGGGCTTGAAACAAATGTTCAACAATATGGACACTGATCGCAGTGGCACAATCACATACGAGGAACTCAAATCTGGATTGACCAAATTGGGATCCAAGCTCAGTGAATATGAAATAAAGCAGCTAATGGAAGCTGCCGATGTTGACAAGAGTGGAACTATTGACTATCAAGAGTTCATCACTGCCACTATAAACCGGCATAAACTGGAGAAGGAAGAGAATCTGTTTAAGGCTTTTCAATACTTTGACAAGGATAACAGTGGATATATAACAAGAGAAGAGCTTAGACAAGCATTGACCGAATATCAGATGGGAGATGAGGCAACTATAGATGAAGTGATCGATGATGTGGATACTGATAACGATGGGAAAATAAATTACCAGGAGTTTGTGGCAATGATGAGAAAGGGGATTCTGGATATTGATGAGAAGGAGAAACCACGATAG 1605 0.4498 MGHCFSKPRSNEIAINYDSPPHHRYEPRPHPRPRRPQNQPHLRPRYPYSAPNSDPSLSIGPSSSFGDQSRILDKPYFDMKTLYAVERELGRGQFGITRLCTEKTTGRKYACKSIPKRRLTKKKQIDDVKREILILQHLSGQPNIVEFKGAYEDWQNVHLVMELCLGGELFDRITAKGSYSESEAASIFRQIVNVVHACHFMGVMHRDLKPENFLLVSKDPKAPLKATDFGLSVFIEEDKVYKEIVGSAYYVAPEVLKRSYGKEIDVWSAGIILYILLSGVPPFWAESEKGIFDAILEGKLDLESAPWPSISAAAKDLIRKMLNHDPKKRITAAEALEHPWMKEGGEASDKPIDNAVLTRMKQFRAMNKMKKLALKVIAENLSEEEIKGLKQMFNNMDTDRSGTITYEELKSGLTKLGSKLSEYEIKQLMEAADVDKSGTIDYQEFITATINRHKLEKEENLFKAFQYFDKDNSGYITREELRQALTEYQMGDEATIDEVIDDVDTDNDGKINYQEFVAMMRKGILDIDEKEKPR 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00065 534 ProSiteProfiles EF-hand calcium-binding domain profile. 384 419 IPR002048 GO:0005509
Viun8g00065 534 MobiDBLite consensus disorder prediction 51 66 - -
Viun8g00065 534 Gene3D Phosphorylase Kinase; domain 1 84 168 - -
Viun8g00065 534 PANTHER SERINE/THREONINE-PROTEIN KINASE 69 516 - -
Viun8g00065 534 ProSitePatterns EF-hand calcium-binding domain. 469 481 IPR018247 -
Viun8g00065 534 ProSiteProfiles EF-hand calcium-binding domain profile. 420 455 IPR002048 GO:0005509
Viun8g00065 534 Gene3D Transferase(Phosphotransferase) domain 1 169 348 - -
Viun8g00065 534 Gene3D - 349 523 - -
Viun8g00065 534 SUPERFAMILY Protein kinase-like (PK-like) 83 348 IPR011009 -
Viun8g00065 534 ProSiteProfiles EF-hand calcium-binding domain profile. 492 526 IPR002048 GO:0005509
Viun8g00065 534 MobiDBLite consensus disorder prediction 1 66 - -
Viun8g00065 534 CDD STKc_CAMK 83 340 - -
Viun8g00065 534 ProSiteProfiles EF-hand calcium-binding domain profile. 456 491 IPR002048 GO:0005509
Viun8g00065 534 SMART efh_1 388 416 IPR002048 GO:0005509
Viun8g00065 534 SMART efh_1 460 488 IPR002048 GO:0005509
Viun8g00065 534 SMART efh_1 424 452 IPR002048 GO:0005509
Viun8g00065 534 SMART efh_1 495 523 IPR002048 GO:0005509
Viun8g00065 534 ProSiteProfiles Protein kinase domain profile. 83 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00065 534 FunFam Calcium-dependent protein kinase 1 85 168 - -
Viun8g00065 534 SUPERFAMILY EF-hand 380 521 IPR011992 -
Viun8g00065 534 Pfam Protein kinase domain 83 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00065 534 ProSitePatterns EF-hand calcium-binding domain. 504 516 IPR018247 -
Viun8g00065 534 ProSitePatterns EF-hand calcium-binding domain. 397 409 IPR018247 -
Viun8g00065 534 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Viun8g00065 534 SMART serkin_6 83 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00065 534 FunFam calcium-dependent protein kinase 1 169 348 - -
Viun8g00065 534 Pfam EF-hand domain pair 458 521 IPR002048 GO:0005509
Viun8g00065 534 Pfam EF-hand domain pair 389 449 IPR002048 GO:0005509
Viun8g00065 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Viun8g00065 534 ProSitePatterns EF-hand calcium-binding domain. 433 445 IPR018247 -
Viun8g00065 534 FunFam Calcium-dependent protein kinase 1 349 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00065 Viun-Chr8 295069 298474 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00065 1 523 EF-hand Containing Proteins AT3G20410 65.985 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Viun8g00065 Pkinase 7.2e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00065 K13412 - gmx:100816157 781.556