Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00062 ATGGGAGTGGGATTCTCAAAGGTGTTAACACACACAACGGACGATGAAATTCCAATTTCTTCGACAGATTCTGCTCCTCAACTCACCTACAAACAACCTCGGAAAAACCTCCTTTTTCCACGTCCGCTTCTTCCTCCTGCCATGCCAACCCAATGTTCTTCACAAACAGAACCCGTTCTCGGGAAGCCTTACGTTAAAATAAAGCACATGTACGAGATGAAGAAAGAGCTGGGAAGAGGCAAGTTTGGCGTGACTTATCTGTGCGTAGAGAAAGCCACAGGAATTGCCTATGCATGCAAATCCATCGCAAAGAAGGGTCCACAAGAAGTTGAGAATGTTAGAAGAGAGGTTATGATTCTGCAGCATCTTTCAGGGCAACATAACATAGTGGAGTTCAAGGAAGCTTATGAGGACAGGGAGAAGGTGCATCTGGTGATGGAGTTGTGCAGTGGAGGTGAACTCTTTCACCGTGTTGTTACAAAGGGAAGACACTCGGAGCGTGAAGCAGCCACAGTGATGAGACAGATTGTGAAGGTGGTCCACGTGTGCCATTTCATGGGTGTGATGCATCGAGACCTCAAGCCAGAGAATTTCTTGTTCGCGACCAAGGACGAGGATGCCCCTTTGAAACTCACGGATTTTGGATCCTCTGTCTTCTTTCACACTGGTGAGGTGTATAAAGATATTGTTGGAAATGCATATTACGTGGCTCCAGAGGTTTTGAAACGGAATTACGGAAAGGAGATAGATGTTTGGAATGCAGGAGTCATTTTATACATTCTCTTAAGTGGGGTGCCTCCATTTTGGGCTGAAACCGAGAAAGGCGTGTTTGTTGAAGTTTTGGGTGGTAAGTTAGATATGGATAGCGAGCCATGGCCTTCTACATCAGATGCTGCAAAAGATTTGATCAGAAAAATGCTTACTTATGACCCTAAGGAACGGATCACAGCTGCTGAGGCCCTTGAACATCCATGGTTGAAAGAAGGTGGTGAAGCATCAGAAAAGCATGAAGACAATGCTGTTTTAAATAGGATGGAACAATTCAAAGCAATGAACCAGATGAAGAAGCTTGCCATGAAGGTAATAGCAGAAAATCTTTCAGAGGAAGAAACAAAGGGCCTGAGACAAATGTTCAACAATATGGATACTGATAACAGTGGCACTATCACATTTGAAGAACTCAAATCTGGATTATCCCGATTGGGTTCCCTGCCTAGTGAATCTGAAATAAGGCAGCTATTGAATGCTATTGGTGATGGCAAAAGTGGAACAATTAACTACTGTCAATTCATTGCTGCAACCATGGATCCACACAAACTGGAGAAGGGGGGGAATTTGTTCAAGGCTTTTCAATACTTTGACAAGGATGACAAGGGGTGA 1380 0.4413 MGVGFSKVLTHTTDDEIPISSTDSAPQLTYKQPRKNLLFPRPLLPPAMPTQCSSQTEPVLGKPYVKIKHMYEMKKELGRGKFGVTYLCVEKATGIAYACKSIAKKGPQEVENVRREVMILQHLSGQHNIVEFKEAYEDREKVHLVMELCSGGELFHRVVTKGRHSEREAATVMRQIVKVVHVCHFMGVMHRDLKPENFLFATKDEDAPLKLTDFGSSVFFHTGEVYKDIVGNAYYVAPEVLKRNYGKEIDVWNAGVILYILLSGVPPFWAETEKGVFVEVLGGKLDMDSEPWPSTSDAAKDLIRKMLTYDPKERITAAEALEHPWLKEGGEASEKHEDNAVLNRMEQFKAMNQMKKLAMKVIAENLSEEETKGLRQMFNNMDTDNSGTITFEELKSGLSRLGSLPSESEIRQLLNAIGDGKSGTINYCQFIAATMDPHKLEKGGNLFKAFQYFDKDDKG 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00062 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Viun8g00062 459 FunFam calcium-dependent protein kinase 1 154 333 - -
Viun8g00062 459 Pfam Protein kinase domain 71 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00062 459 Gene3D Phosphorylase Kinase; domain 1 73 153 - -
Viun8g00062 459 FunFam Calcium-dependent protein kinase 1 73 153 - -
Viun8g00062 459 ProSiteProfiles Protein kinase domain profile. 71 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00062 459 CDD EFh 374 433 IPR002048 GO:0005509
Viun8g00062 459 SMART serkin_6 71 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00062 459 Gene3D - 346 435 - -
Viun8g00062 459 ProSitePatterns EF-hand calcium-binding domain. 382 394 IPR018247 -
Viun8g00062 459 Gene3D Transferase(Phosphotransferase) domain 1 154 345 - -
Viun8g00062 459 CDD STKc_CAMK 71 325 - -
Viun8g00062 459 ProSiteProfiles EF-hand calcium-binding domain profile. 369 404 IPR002048 GO:0005509
Viun8g00062 459 SUPERFAMILY EF-hand 365 459 IPR011992 -
Viun8g00062 459 Gene3D - 352 459 - -
Viun8g00062 459 SUPERFAMILY Protein kinase-like (PK-like) 56 340 IPR011009 -
Viun8g00062 459 ProSitePatterns Protein kinases ATP-binding region signature. 77 105 IPR017441 GO:0005524
Viun8g00062 459 SMART efh_1 373 401 IPR002048 GO:0005509
Viun8g00062 459 PANTHER SERINE/THREONINE-PROTEIN KINASE 66 458 - -
Viun8g00062 459 Pfam EF hand 374 400 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00062 Viun-Chr8 291703 294365 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00062 45 459 EF-hand Containing Proteins AT1G50700 63.876 0.0 567
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Viun8g00062 Pkinase 2.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00062 K13412 - gmx:100792610 732.635