Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00041 ATGGCGGGTCAGTGCTCCAATGAAGGCTCCAGTACTGGAAATATTTCAGCAGAGTGTTCAGATTCAACTGTTCAGCTCAATATTAAAACTCTAGATTCCCGCATCTACAGTTTTCAAGTGAACAAAAATATGCCTGTTTCGTTGTTCAAAGAGAAAATTGCAAATGAAATTGGTGTTCCAGTTAGTCAGCAACGATTGATATTTAGAGGAAAAGTCTTAAAGGATGAGCATGTTCTTTCCGAGTATCATGTTGAGAATGGGCATACATTGCATTTAGTTGAAAGACAACCAAATCAGCCACAGGCTTCTGGTACGAGTGCTGATGAGCCCACTGGTACAAGTAGTAACCAAGGAAATGACGTGGGCTCAGGGCCTCCTCGTAACCGTGTTGGGCAAATTTCACACAGTGTTGTTCTTGGGACATTTAACGTGGGGGAACAGGGTGAAGGAATTGTTCATGACCTCACTCGGGTTATTGGGCATGTTTTAAATTCTATTGGAAACGGTGGCCAAAGTACAGTAAATGGTCCTAATGCTGTGCAAACTCCTTCAGCTCAACCAGGCAATGAAACTGAAGGAATGCGTGCTGGAAATCAAAACCCAGCTGGAAACCAGGCACCATCTGGACAGACATTTCATGGTCCAACATTTCAATCTGTATCTCATGTTGTTCAGATTCCTGTGGCAGCAGGATCCATACCCCTCCCATCTCTCAATGCACCAATTCCTGATTCATTGAACACACTGATTGAGTTTATGAATCGCATGGAACAGACACTGACACAAAATGGTTATGAGTCAAATTTTTCACCAGCTAACCCTGGAGATCAGAGAGAGGAATTGCCTTCTAATCAGCAAGGGATGCCGACTCTTGAAGCATTAAGTACTGTCTTGCGTCGTGCAGAGCGACTACTTGGTGGTCAAACTGTTGCTGCACTTTCACATATTGCAGGACGCTTGGAAAGAGAAAGAGCTTCTGCTGATCCACGTGTAAGAGGTCAGATACAGTCAGAGTCAGTGCAGATAGGACTTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTTGGCCGGACAATGCTGACACTGCGTATGGGACAATCTTCTGCAGAATCAGTTGTTAACAATGGACCAGCTGTTTACATTTCTCCATCAGGGCCAAATCCTATAATGGCGCAGCCTTTTCCACTTCAGGCAAGCTCCCTCTTTGGTGGCTCACTTCCCTCCTCAACTCCTGCAAATTTGGGTACCATTGGTATTGGAAGTGCTCCTAGGAACGTGAACATTCATATACATGCTGGTACCTCTATTGCACCCCTTGTTTCAGCAATTGGTTCTAGGCCAAATAATGGGGAAGGGACACGAGGTGAACAGCATAATGAGCCTGGTTCTGGTGGTTCAGGTTCAACACGGGTATTACCTGTTAGAAATGTCATAGCCGCAACTATCCCATCACACCCTCCTGGTGTTGGAGTCTCTAGTAGCACGCAAACTGGATTCAGTGTTTCTACTTCACAGCCACCTGATTCAGCTTCATTGTCGTCTGCTTTAGCTGAAATTAATGCTCGCCTTATGAATGTTGTTGGCAGTATGCAAGGAGATAACACAGCTCCATCAGGTGAAATGGAATCAATCAGCAGGGACTTGTCTTCTGGTTCTGAATCAAGACCTTCTACACTAAATGCACAGCAAGATACCGTGGAAATGAATGGCTTTGGGGCTTCCAGTGCTTCCTTAGTTGGCAGTACGCCTGAAAGTGAGGTACAGAAGCTCCAAACTGAGGCAGTCCAAACCTCTAGTAATGCTGAGAGAGATGTTTTGGTTGATAAATTTGTTTCTTCTTCCAAACAAGATTTACAAAGTTGTTCTAGTGGAGAAACAATTGTAAAACCAGAAAAAGACGGAGACGTTTCAGCTGTCAGTGACAGACAAGATGTAACGGAACCTGCCAAGTCTGCTCCCCTAGGATTGGGTATGGGTGGCTTAGAGCGGAAGAAGCGAACCAGACCTCAACCTCCTGTGAGTAAAGTTGCTGATGATGGATCTTCGAGTTCTTCTGTCGATAAAAGTCAGCAAACCAGAACAGATGGTCAACATATACTACAAACTCTTGCAAGTCATGGATCTGCTTTGAATTCAAGAAATGCTAATGGCCCATCCCAGCGGCCCTTGCCCTCCAGTGACCGACCGATTGATGTGGCTGGTTTAATGTCTCAGGCTTTACAAAGTCCTGCTTTGAATGGTTTGTTGGAAGGGGTTTCACAGCAAACTGGAGTTGACTCACCTGATGGTTTGAGAAACATGTTGCAGCAGTTCACACAGAGCCCACAACTGATGAATACAGTCAACCAAATTGTCCAACAGGTTGGCAGTCAGGATGTGGGGAATATGTTTGCTGGAGCAGAAAGAGGGCAGGGTGGTGGTATTGACATTTCAAGGATGTTTCAGCAGATGATGCCCATTGTATCTCAAGCTCTTGGTGGGGCAAATCCTTCCTCACTGTTCTCTGTTGAAGAAGCAGTTCCTGGTGCACCCTACCAAGATGGAACAGTTAACCGAAGAGATGGATATTCTGATAATCCAAGTTTACAGCTCGACCTTCAACCACTGGCTGAGAGGATTGAGCATTTGAGTCCTTCTGTAGATATTTTCGGTGCTGTAGCTGAAAATGCTGTCCAGCTATCTGGCTTGGGAAGCGCTTCTAATGATCTTCTGGATGAGTTATGCCACAATGAGAGTCTTGCCAGGGAATATGTAGATATGTTGCGATATGATGTAAGTAAGCTGCTCGAGGGACGTTCTAAACCGGACAAATCCTAA 2820 0.4514 MAGQCSNEGSSTGNISAECSDSTVQLNIKTLDSRIYSFQVNKNMPVSLFKEKIANEIGVPVSQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNQPQASGTSADEPTGTSSNQGNDVGSGPPRNRVGQISHSVVLGTFNVGEQGEGIVHDLTRVIGHVLNSIGNGGQSTVNGPNAVQTPSAQPGNETEGMRAGNQNPAGNQAPSGQTFHGPTFQSVSHVVQIPVAAGSIPLPSLNAPIPDSLNTLIEFMNRMEQTLTQNGYESNFSPANPGDQREELPSNQQGMPTLEALSTVLRRAERLLGGQTVAALSHIAGRLERERASADPRVRGQIQSESVQIGLAMQHLGALLLELGRTMLTLRMGQSSAESVVNNGPAVYISPSGPNPIMAQPFPLQASSLFGGSLPSSTPANLGTIGIGSAPRNVNIHIHAGTSIAPLVSAIGSRPNNGEGTRGEQHNEPGSGGSGSTRVLPVRNVIAATIPSHPPGVGVSSSTQTGFSVSTSQPPDSASLSSALAEINARLMNVVGSMQGDNTAPSGEMESISRDLSSGSESRPSTLNAQQDTVEMNGFGASSASLVGSTPESEVQKLQTEAVQTSSNAERDVLVDKFVSSSKQDLQSCSSGETIVKPEKDGDVSAVSDRQDVTEPAKSAPLGLGMGGLERKKRTRPQPPVSKVADDGSSSSSVDKSQQTRTDGQHILQTLASHGSALNSRNANGPSQRPLPSSDRPIDVAGLMSQALQSPALNGLLEGVSQQTGVDSPDGLRNMLQQFTQSPQLMNTVNQIVQQVGSQDVGNMFAGAERGQGGGIDISRMFQQMMPIVSQALGGANPSSLFSVEEAVPGAPYQDGTVNRRDGYSDNPSLQLDLQPLAERIEHLSPSVDIFGAVAENAVQLSGLGSASNDLLDELCHNESLAREYVDMLRYDVSKLLEGRSKPDKS 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00041 939 Gene3D - 13 108 - -
Viun8g00041 939 SUPERFAMILY Ubiquitin-like 19 99 IPR029071 -
Viun8g00041 939 MobiDBLite consensus disorder prediction 264 284 - -
Viun8g00041 939 MobiDBLite consensus disorder prediction 488 514 - -
Viun8g00041 939 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 938 - -
Viun8g00041 939 MobiDBLite consensus disorder prediction 168 215 - -
Viun8g00041 939 SMART ubq_7 24 95 IPR000626 GO:0005515
Viun8g00041 939 MobiDBLite consensus disorder prediction 677 695 - -
Viun8g00041 939 MobiDBLite consensus disorder prediction 93 131 - -
Viun8g00041 939 FunFam Large proline-rich protein BAG6 16 109 - -
Viun8g00041 939 MobiDBLite consensus disorder prediction 613 695 - -
Viun8g00041 939 MobiDBLite consensus disorder prediction 442 471 - -
Viun8g00041 939 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Viun8g00041 939 MobiDBLite consensus disorder prediction 484 514 - -
Viun8g00041 939 CDD Ubl_ubiquitin_like 26 93 - -
Viun8g00041 939 MobiDBLite consensus disorder prediction 709 724 - -
Viun8g00041 939 MobiDBLite consensus disorder prediction 93 123 - -
Viun8g00041 939 MobiDBLite consensus disorder prediction 530 561 - -
Viun8g00041 939 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Viun8g00041 939 MobiDBLite consensus disorder prediction 709 731 - -
Viun8g00041 939 MobiDBLite consensus disorder prediction 447 471 - -
Viun8g00041 939 PRINTS Ubiquitin signature 55 75 IPR019956 -
Viun8g00041 939 PRINTS Ubiquitin signature 76 97 IPR019956 -
Viun8g00041 939 MobiDBLite consensus disorder prediction 613 627 - -
Viun8g00041 939 MobiDBLite consensus disorder prediction 574 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00041 Viun-Chr8 208897 221920 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00041 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 1.89e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00041 - - gmx:100783611 1506.89