Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00040 ATGGCGGGTCAGTGCTCCAATGAAGGCTCCAGTACTGGAAATATTTCAGCAGAGTGTTCAGATTCAACTGTTCAGCTCAATATTAAAACTCTAGATTCCCGCATCTACAGTTTTCAAGTGAACAAAAATATGCCTGTTTCGTTGTTCAAAGAGAAAATTGCAAATGAAATTGGTGTTCCAGTTAGTCAGCAACGATTGATATTTAGAGGAAAAGTCTTAAAGGATGAGCATGTTCTTTCCGAGTATCATGTTGAGAATGGGCATACATTGCATTTAGTTGAAAGACAACCAAATCAGCCACAGGCTTCTGGTACGAGTGCTGATGAGCCCACTGGTACAAGTAGTAACCAAGGTATACCTTCAGGAAATGACGTGGGCTCAGGGCCTCCTCGTAACCGTGTTGGGCAAATTTCACACAGTGTTGTTCTTGGGACATTTAACGTGGGGGAACAGGGTGAAGGAATTGTTCATGACCTCACTCGGGTTATTGGGCATGTTTTAAATTCTATTGGAAACGGTGGCCAAAGTACAGTAAATGGTCCTAATGCTGTGCAAACTCCTTCAGCTCAACCAGGCAATGAAACTGAAGGAATGCGTGCTGGAAATCAAAACCCAGCTGGAAACCAGGCACCATCTGGACAGACATTTCATGGTCCAACATTTCAATCTGTATCTCATGTTGTTCAGATTCCTGTGGCAGCAGGATCCATACCCCTCCCATCTCTCAATCCAATTCCTGATTCATTGAACACACTGATTGAGTTTATGAATCGCATGGAACAGACACTGACACAAAATGGTTATGAGTCAAATTTTTCACCAGCTAACCCTGGAGATCAGAGAGAGGAATTGCCTTCTAATCAGCAAGGGATGCCGACTCTTGAAGCATTAAGTACTGTCTTGCGTCGTGCAGAGCGACTACTTGGTGGTCAAACTGTTGCTGCACTTTCACATATTGCAGGACGCTTGGAAAGAGAAAGAGCTTCTGCTGATCCACGTGTAAGAGGTCAGATACAGTCAGAGTCAGTGCAGATAGGACTTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTTGGCCGGACAATGCTGACACTGCGTATGGGACAATCTTCTGCAGAATCAGTTGTTAACAATGGACCAGCTGTTTACATTTCTCCATCAGGGCCAAATCCTATAATGGCGCAGCCTTTTCCACTTCAGGCAAGCTCCCTCTTTGGTGGCTCACTTCCCTCCTCAACTCCTGCAAATTTGGGTACCATTGGTATTGGAAGTGCTCCTAGGAACGTGAACATTCATATACATGCTGGTACCTCTATTGCACCCCTTGTTTCAGCAATTGGTTCTAGGCCAAATAATGGGGAAGGGACACGAGGTGAACAGCATAATGAGCCTGGTTCTGGTGGTTCAGGTTCAACACGGGTATTACCTGTTAGAAATGTCATAGCCGCAACTATCCCATCACACCCTCCTGGTGTTGGAGTCTCTAGTAGCACGCAAACTGGATTCAGTGTTTCTACTTCACAGCCACCTGATTCAGCTTCATTGTCGTCTGCTTTAGCTGAAATTAATGCTCGCCTTATGAATGTTGTTGGCAGTATGCAAGGAGATAACACAGCTCCATCAGGTGAAATGGAATCAATCAGCAGGGACTTGTCTTCTGGTTCTGAATCAAGACCTTCTACACTAAATGCACAGCAAGATACCGTGGAAATGAATGGCTTTGGGGCTTCCAGTGCTTCCTTAGTTGGCAGTACGCCTGAAAGTGAGGTACAGAAGCTCCAAACTGAGGCAGTCCAAACCTCTAGTAATGCTGAGAGAGATGTTTTGGTTGATAAATTTGTTTCTTCTTCCAAACAAGATTTACAAAGTTGTTCTAGTGGAGAAACAATTGTAAAACCAGAAAAAGACGGAGACGTTTCAGCTGTCAGTGACAGACAAGATGTAACGGAACCTGCCAAGTCTGCTCCCCTAGGATTGGGTATGGGTGGCTTAGAGCGGAAGAAGCGAACCAGACCTCAACCTCCTGTGAGTAAAGTTGCTGATGATGGATCTTCGAGTTCTTCTGTCGATAAAAGTCAGCAAACCAGAACAGATGGTCAACATATACTACAAACTCTTGCAAGTCATGGATCTGCTTTGAATTCAAGAAATGCTAATGGCCCATCCCAGCGGCCCTTGCCCTCCAGTGACCGACCGATTGATGTGGCTGGTTTAATGTCTCAGGCTTTACAAAGTCCTGCTTTGAATGGTTTGTTGGAAGGGGTTTCACAGCAAACTGGAGTTGACTCACCTGATGGTTTGAGAAACATGTTGCAGCAGTTCACACAGAGCCCACAACTGATGAATACAGTCAACCAAATTGTCCAACAGGTTGGCAGTCAGGATGTGGGGAATATGTTTGCTGGAGCAGAAAGAGGGCAGGGTGGTGGTATTGACATTTCAAGGATGTTTCAGCAGATGATGCCCATTGTATCTCAAGCTCTTGGTGGGGCAAATCCTTCCTCACTGTTCTCTGTTGAAGAAGCAGTTCCTGGTGCACCCTACCAAGATGGAACAGTTAACCGAAGAGATGGATATTCTGATAATCCAAGTTTACAGCTCGACCTTCAACCACTGGCTGAGAGGATTGAGCATTTGAGTCCTTCTGTAGATATTTTCGGTGCTGTAGCTGAAAATGCTGTCCAGCTATCTGGCTTGGGAAGCGCTTCTAATGATCTTCTGGATGAGTTATGCCACAATGAGAGTCTTGCCAGGGAATATGTAGATATGTTGCGATATGATGTAAGTAAGCTGCTCGAGGGACGTTCTAAACCGGACAAATCCTAA 2829 0.451 MAGQCSNEGSSTGNISAECSDSTVQLNIKTLDSRIYSFQVNKNMPVSLFKEKIANEIGVPVSQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNQPQASGTSADEPTGTSSNQGIPSGNDVGSGPPRNRVGQISHSVVLGTFNVGEQGEGIVHDLTRVIGHVLNSIGNGGQSTVNGPNAVQTPSAQPGNETEGMRAGNQNPAGNQAPSGQTFHGPTFQSVSHVVQIPVAAGSIPLPSLNPIPDSLNTLIEFMNRMEQTLTQNGYESNFSPANPGDQREELPSNQQGMPTLEALSTVLRRAERLLGGQTVAALSHIAGRLERERASADPRVRGQIQSESVQIGLAMQHLGALLLELGRTMLTLRMGQSSAESVVNNGPAVYISPSGPNPIMAQPFPLQASSLFGGSLPSSTPANLGTIGIGSAPRNVNIHIHAGTSIAPLVSAIGSRPNNGEGTRGEQHNEPGSGGSGSTRVLPVRNVIAATIPSHPPGVGVSSSTQTGFSVSTSQPPDSASLSSALAEINARLMNVVGSMQGDNTAPSGEMESISRDLSSGSESRPSTLNAQQDTVEMNGFGASSASLVGSTPESEVQKLQTEAVQTSSNAERDVLVDKFVSSSKQDLQSCSSGETIVKPEKDGDVSAVSDRQDVTEPAKSAPLGLGMGGLERKKRTRPQPPVSKVADDGSSSSSVDKSQQTRTDGQHILQTLASHGSALNSRNANGPSQRPLPSSDRPIDVAGLMSQALQSPALNGLLEGVSQQTGVDSPDGLRNMLQQFTQSPQLMNTVNQIVQQVGSQDVGNMFAGAERGQGGGIDISRMFQQMMPIVSQALGGANPSSLFSVEEAVPGAPYQDGTVNRRDGYSDNPSLQLDLQPLAERIEHLSPSVDIFGAVAENAVQLSGLGSASNDLLDELCHNESLAREYVDMLRYDVSKLLEGRSKPDKS 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00040 942 Gene3D - 13 108 - -
Viun8g00040 942 MobiDBLite consensus disorder prediction 616 630 - -
Viun8g00040 942 MobiDBLite consensus disorder prediction 577 604 - -
Viun8g00040 942 SUPERFAMILY Ubiquitin-like 19 99 IPR029071 -
Viun8g00040 942 MobiDBLite consensus disorder prediction 680 698 - -
Viun8g00040 942 MobiDBLite consensus disorder prediction 172 219 - -
Viun8g00040 942 FunFam Large proline-rich protein BAG6 16 109 - -
Viun8g00040 942 MobiDBLite consensus disorder prediction 445 474 - -
Viun8g00040 942 SMART ubq_7 24 95 IPR000626 GO:0005515
Viun8g00040 942 PRINTS Ubiquitin signature 76 97 IPR019956 -
Viun8g00040 942 PRINTS Ubiquitin signature 55 75 IPR019956 -
Viun8g00040 942 MobiDBLite consensus disorder prediction 491 517 - -
Viun8g00040 942 MobiDBLite consensus disorder prediction 267 287 - -
Viun8g00040 942 MobiDBLite consensus disorder prediction 712 727 - -
Viun8g00040 942 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Viun8g00040 942 MobiDBLite consensus disorder prediction 450 474 - -
Viun8g00040 942 MobiDBLite consensus disorder prediction 93 135 - -
Viun8g00040 942 MobiDBLite consensus disorder prediction 712 734 - -
Viun8g00040 942 CDD Ubl_ubiquitin_like 26 93 - -
Viun8g00040 942 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 941 - -
Viun8g00040 942 MobiDBLite consensus disorder prediction 93 123 - -
Viun8g00040 942 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Viun8g00040 942 MobiDBLite consensus disorder prediction 616 698 - -
Viun8g00040 942 MobiDBLite consensus disorder prediction 487 517 - -
Viun8g00040 942 MobiDBLite consensus disorder prediction 533 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00040 Viun-Chr8 208897 221920 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00040 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 1.72e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00040 - - gmx:100783611 1494.95