Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00039 ATGGCGGGTCAGTGCTCCAATGAAGGCTCCAGTACTGGAAATATTTCAGCAGAGTGTTCAGATTCAACTGTTCAGCTCAATATTAAAACTCTAGATTCCCGCATCTACAGTTTTCAAGTGAACAAAAATATGCCTGTTTCGTTGTTCAAAGAGAAAATTGCAAATGAAATTGGTGTTCCAGTTAGTCAGCAACGATTGATATTTAGAGGAAAAGTCTTAAAGGATGAGCATGTTCTTTCCGAGTATCATGTTGAGAATGGGCATACATTGCATTTAGTTGAAAGACAACCAAATCAGCCACAGGCTTCTGGTACGAGTGCTGATGAGCCCACTGGTACAAGTAGTAACCAAGGTATACCTTCAGGAAATGACGTGGGCTCAGGGCCTCCTCGTAACCGTGTTGGGCAAATTTCACACAGTGTTGTTCTTGGGACATTTAACGTGGGGGAACAGGGTGAAGGAATTGTTCATGACCTCACTCGGGTTATTGGGCATGTTTTAAATTCTATTGGAAACGGTGGCCAAAGTACAGTAAATGGTCCTAATGCTGTGCAAACTCCTTCAGCTCAACCAGGCAATGAAACTGAAGGAATGCGTGCTGGAAATCAAAACCCAGCTGGAAACCAGGCACCATCTGGACAGACATTTCATGGTCCAACATTTCAATCTGTATCTCATGTTGTTCAGATTCCTGTGGCAGCAGGATCCATACCCCTCCCATCTCTCAATGCACCAATTCCTGATTCATTGAACACACTGATTGAGTTTATGAATCGCATGGAACAGACACTGACACAAAATGGTTATGAGTCAAATTTTTCACCAGCTAACCCTGGAGATCAGAGAGAGGAATTGCCTTCTAATCAGCAAGGGATGCCGACTCTTGAAGCATTAAGTACTGTCTTGCGTCGTGCAGAGCGACTACTTGGTGGTCAAACTGTTGCTGCACTTTCACATATTGCAGGACGCTTGGAAAGAGAAAGAGCTTCTGCTGATCCACGTGTAAGAGGTCAGATACAGTCAGAGTCAGTGCAGATAGGACTTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTTGGCCGGACAATGCTGACACTGCGTATGGGACAATCTTCTGCAGAATCAGTTGTTAACAATGGACCAGCTGTTTACATTTCTCCATCAGGGCCAAATCCTATAATGGCGCAGCCTTTTCCACTTCAGGCAAGCTCCCTCTTTGGTGGCTCACTTCCCTCCTCAACTCCTGCAAATTTGGGTACCATTGGTATTGGAAGTGCTCCTAGGAACGTGAACATTCATATACATGCTGGTACCTCTATTGCACCCCTTGTTTCAGCAATTGGTTCTAGGCCAAATAATGGGGAAGGGACACGAGGTGAACAGCATAATGAGCCTGGTTCTGGTGGTTCAGGTTCAACACGGGTATTACCTGTTAGAAATGTCATAGCCGCAACTATCCCATCACACCCTCCTGGTGTTGGAGTCTCTAGTAGCACGCAAACTGGATTCAGTGTTTCTACTTCACAGCCACCTGATTCAGCTTCATTGTCGTCTGCTTTAGCTGAAATTAATGCTCGCCTTATGAATGTTGTTGGCAGTATGCAAGGAGATAACACAGCTCCATCAGGTGAAATGGAATCAATCAGCAGGGACTTGTCTTCTGGTTCTGAATCAAGACCTTCTACACTAAATGCACAGCAAGATACCGTGGAAATGAATGGCTTTGGGGCTTCCAGTGCTTCCTTAGTTGGCAGTACGCCTGAAAGTGAGCTCCAAACTGAGGCAGTCCAAACCTCTAGTAATGCTGAGAGAGATGTTTTGGTTGATAAATTTGTTTCTTCTTCCAAACAAGATTTACAAAGTTGTTCTAGTGGAGAAACAATTGTAAAACCAGAAAAAGACGGAGACGTTTCAGCTGTCAGTGACAGACAAGATGTAACGGAACCTGCCAAGTCTGCTCCCCTAGGATTGGGTATGGGTGGCTTAGAGCGGAAGAAGCGAACCAGACCTCAACCTCCTGTGAGTAAAGTTGCTGATGATGGATCTTCGAGTTCTTCTGTCGATAAAAGTCAGCAAACCAGAACAGATGGTCAACATATACTACAAACTCTTGCAAGTCATGGATCTGCTTTGAATTCAAGAAATGCTAATGGCCCATCCCAGCGGCCCTTGCCCTCCAGTGACCGACCGATTGATGTGGCTGGTTTAATGTCTCAGGCTTTACAAAGTCCTGCTTTGAATGGTTTGTTGGAAGGGGTTTCACAGCAAACTGGAGTTGACTCACCTGATGGTTTGAGAAACATGTTGCAGCAGTTCACACAGAGCCCACAACTGATGAATACAGTCAACCAAATTGTCCAACAGGTTGGCAGTCAGGATGTGGGGAATATGTTTGCTGGAGCAGAAAGAGGGCAGGGTGGTGGTATTGACATTTCAAGGATGTTTCAGCAGATGATGCCCATTGTATCTCAAGCTCTTGGTGGGGCAAATCCTTCCTCACTGTTCTCTGTTGAAGAAGCAGTTCCTGGTGCACCCTACCAAGATGGAACAGTTAACCGAAGAGATGGATATTCTGATAATCCAAGTTTACAGCTCGACCTTCAACCACTGGCTGAGAGGATTGAGCATTTGAGTCCTTCTGTAGATATTTTCGGTGCTGTAGCTGAAAATGCTGTCCAGCTATCTGGCTTGGGAAGCGCTTCTAATGATCTTCTGGATGAGTTATGCCACAATGAGAGTCTTGCCAGGGAATATGTAGATATGTTGCGATATGATGTAAGTAAGCTGCTCGAGGGACGTTCTAAACCGGACAAATCCTAA 2823 0.4513 MAGQCSNEGSSTGNISAECSDSTVQLNIKTLDSRIYSFQVNKNMPVSLFKEKIANEIGVPVSQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNQPQASGTSADEPTGTSSNQGIPSGNDVGSGPPRNRVGQISHSVVLGTFNVGEQGEGIVHDLTRVIGHVLNSIGNGGQSTVNGPNAVQTPSAQPGNETEGMRAGNQNPAGNQAPSGQTFHGPTFQSVSHVVQIPVAAGSIPLPSLNAPIPDSLNTLIEFMNRMEQTLTQNGYESNFSPANPGDQREELPSNQQGMPTLEALSTVLRRAERLLGGQTVAALSHIAGRLERERASADPRVRGQIQSESVQIGLAMQHLGALLLELGRTMLTLRMGQSSAESVVNNGPAVYISPSGPNPIMAQPFPLQASSLFGGSLPSSTPANLGTIGIGSAPRNVNIHIHAGTSIAPLVSAIGSRPNNGEGTRGEQHNEPGSGGSGSTRVLPVRNVIAATIPSHPPGVGVSSSTQTGFSVSTSQPPDSASLSSALAEINARLMNVVGSMQGDNTAPSGEMESISRDLSSGSESRPSTLNAQQDTVEMNGFGASSASLVGSTPESELQTEAVQTSSNAERDVLVDKFVSSSKQDLQSCSSGETIVKPEKDGDVSAVSDRQDVTEPAKSAPLGLGMGGLERKKRTRPQPPVSKVADDGSSSSSVDKSQQTRTDGQHILQTLASHGSALNSRNANGPSQRPLPSSDRPIDVAGLMSQALQSPALNGLLEGVSQQTGVDSPDGLRNMLQQFTQSPQLMNTVNQIVQQVGSQDVGNMFAGAERGQGGGIDISRMFQQMMPIVSQALGGANPSSLFSVEEAVPGAPYQDGTVNRRDGYSDNPSLQLDLQPLAERIEHLSPSVDIFGAVAENAVQLSGLGSASNDLLDELCHNESLAREYVDMLRYDVSKLLEGRSKPDKS 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00039 940 Gene3D - 13 108 - -
Viun8g00039 940 MobiDBLite consensus disorder prediction 710 732 - -
Viun8g00039 940 SUPERFAMILY Ubiquitin-like 19 99 IPR029071 -
Viun8g00039 940 MobiDBLite consensus disorder prediction 268 288 - -
Viun8g00039 940 MobiDBLite consensus disorder prediction 492 518 - -
Viun8g00039 940 MobiDBLite consensus disorder prediction 172 219 - -
Viun8g00039 940 FunFam Large proline-rich protein BAG6 16 109 - -
Viun8g00039 940 MobiDBLite consensus disorder prediction 614 696 - -
Viun8g00039 940 SMART ubq_7 24 95 IPR000626 GO:0005515
Viun8g00039 940 MobiDBLite consensus disorder prediction 446 475 - -
Viun8g00039 940 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Viun8g00039 940 MobiDBLite consensus disorder prediction 488 518 - -
Viun8g00039 940 MobiDBLite consensus disorder prediction 93 135 - -
Viun8g00039 940 CDD Ubl_ubiquitin_like 26 93 - -
Viun8g00039 940 MobiDBLite consensus disorder prediction 614 628 - -
Viun8g00039 940 MobiDBLite consensus disorder prediction 678 696 - -
Viun8g00039 940 MobiDBLite consensus disorder prediction 93 123 - -
Viun8g00039 940 MobiDBLite consensus disorder prediction 534 565 - -
Viun8g00039 940 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Viun8g00039 940 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 939 - -
Viun8g00039 940 MobiDBLite consensus disorder prediction 451 475 - -
Viun8g00039 940 MobiDBLite consensus disorder prediction 578 602 - -
Viun8g00039 940 MobiDBLite consensus disorder prediction 710 725 - -
Viun8g00039 940 PRINTS Ubiquitin signature 76 97 IPR019956 -
Viun8g00039 940 PRINTS Ubiquitin signature 55 75 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00039 Viun-Chr8 208897 221920 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00039 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 1.65e-10 58.2