Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00037 ATGGCGGGTCAGTGCTCCAATGAAGGCTCCAGTACTGGAAATATTTCAGCAGAGTGTTCAGATTCAACTGTTCAGCTCAATATTAAAACTCTAGATTCCCGCATCTACAGTTTTCAAGTGAACAAAAATATGCCTGTTTCGTTGTTCAAAGAGAAAATTGCAAATGAAATTGGTGTTCCAGTTAGTCAGCAACGATTGATATTTAGAGGAAAAGTCTTAAAGGATGAGCATGTTCTTTCCGAGTATCATGTTGAGAATGGGCATACATTGCATTTAGTTGAAAGACAACCAAATCAGCCACAGGCTTCTGGTACGAGTGCTGATGAGCCCACTGGTACAAGTAGTAACCAAGGTATACCTTCAGGAAATGACGTGGGCTCAGGGCCTCCTCGTAACCGTGTTGGGCAAATTTCACACAGTGTTGTTCTTGGGACATTTAACGTGGGGGAACAGGGTGAAGGAATTGTTCATGACCTCACTCGGGTTATTGGGCATGTTTTAAATTCTATTGGAAACGGTGGCCAAAGTACAGTAAATGGTCCTAATGCTGTGCAAACTCCTTCAGCTCAACCAGGCAATGAAACTGAAGGAATGCGTGCTGGAAATCAAAACCCAGCTGGAAACCAGGCACCATCTGGACAGACATTTCATGGTCCAACATTTCAATCTGTATCTCATGTTGTTCAGATTCCTGTGGCAGCAGGATCCATACCCCTCCCATCTCTCAATGCACCAATTCCTGATTCATTGAACACACTGATTGAGTTTATGAATCGCATGGAACAGACACTGACACAAAATGGTTATGAGTCAAATTTTTCACCAGCTAACCCTGGAGATCAGAGAGAGGAATTGCCTTCTAATCAGCAAGGGATGCCGACTCTTGAAGCATTAAGTACTGTCTTGCGTCGTGCAGAGCGACTACTTGGTGGTCAAACTGTTGCTGCACTTTCACATATTGCAGGACGCTTGGAAAGAGAAAGAGCTTCTGCTGATCCACGTGTAAGAGGTCAGATACAGTCAGAGTCAGTGCAGATAGGACTTGCTATGCAGCATTTGGGTGCACTTCTACTTGAACTTGGCCGGACAATGCTGACACTGCGTATGGGACAATCTTCTGCAGAATCAGTTGTTAACAATGGACCAGCTGTTTACATTTCTCCATCAGGGCCAAATCCTATAATGGCGCAGCCTTTTCCACTTCAGGCAAGCTCCCTCTTTGGTGGCTCACTTCCCTCCTCAACTCCTGCAAATTTGGGTACCATTGGTATTGGAAGTGCTCCTAGGAACGTGAACATTCATATACATGCTGGTACCTCTATTGCACCCCTTGTTTCAGCAATTGGTTCTAGGCCAAATAATGGGGAAGGGACACGAGGTGAACAGCATAATGAGCCTGGTTCTGGTGGTTCAGGTTCAACACGGGTATTACCTGTTAGAAATGTCATAGCCGCAACTATCCCATCACACCCTCCTGGTGTTGGAGTCTCTAGTAGCACGCAAACTGGATTCAGTGTTTCTACTTCACAGCCACCTGATTCAGCTTCATTGTCGTCTGCTTTAGCTGAAATTAATGCTCGCCTTATGAATGTTGTTGGCAGTATGCAAGGAGATAACACAGCTCCATCAGGTGAAATGGAATCAATCAGCAGGGACTTGTCTTCTGGTTCTGAATCAAGACCTTCTACACTAAATGCACAGCAAGATACCGTGGAAATGAATGGCTTTGGGGCTTCCAGTGCTTCCTTAGTTGGCAGTACGCCTGAAAGTGAGGTACAGAAGCTCCAAACTGAGGCAGTCCAAACCTCTAGTAATGCTGAGAGAGATGTTTTGGTTGATAAATTTGTTTCTTCTTCCAAACAAGATTTACAAAGTTGTTCTAGTGGAGAAACAATTGTAAAACCAGAAAAAGACGGAGACGTTTCAGCTGTCAGTGACAGACAAGATGTAACGGAACCTGCCAAGTCTGCTCCCCTAGGATTGGGTATGGGTGGCTTAGAGCGGAAGAAGCGAACCAGACCTCAACCTCCTGTGAGTAAAGTTGCTGATGATGGATCTTCGAGTTCTTCTGTCGATAAAAGTCAGCAAACCAGAACAGATGGTCAACATATACTACAAACTCTTGCAAGTCATGGATCTGCTTTGAATTCAAGAAATGCTAATGGCCCATCCCAGCGGCCCTTGCCCTCCAGTGACCGACCGATTGATGTGGCTGGTTTAATGTCTCAGGCTTTACAAAGTCCTGCTTTGAATGGTTTGTTGGAAGGGGTTTCACAGCAAACTGGAGTTGACTCACCTGATGGTTTGAGAAACATGTTGCAGCAGTTCACACAGAGCCCACAACTGATGAATACAGTCAACCAAATTGTCCAACAGGTTGGCAGTCAGGATGTGGGGAATATGTTTGCTGGAGCAGAAAGAGGGCAGGGTGGTGGTATTGACATTTCAAGGATGTTTCAGCAGATGATGCCCATTGTATCTCAAGCTCTTGGTGGGGCAAATCCTTCCTCACTGTTCTCTGTTGAAGAAGCAGTTCCTGGTGCACCCTACCAAGATGGAACAGTTAACCGAAGAGATGGATATTCTGATAATCCAAGTTTACAGCTCGACCTTCAACCACTGGCTGAGAGGATTGAGCATTTGAGTCCTTCTGTAGATATTTTCGGTGCTGTAGCTGAAAATGCTGTCCAGCTATCTGGCTTGGGAAGCGCTTCTAATGATCTTCTGGATGAGTTATGCCACAATGAGAGTCTTGCCAGGGAATATGTAGATATGTTGCGATATGATGTAAGTAAGCTGCTCGAGGGACGTTCTAAACCGGACAAATCCTAA 2832 0.4513 MAGQCSNEGSSTGNISAECSDSTVQLNIKTLDSRIYSFQVNKNMPVSLFKEKIANEIGVPVSQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNQPQASGTSADEPTGTSSNQGIPSGNDVGSGPPRNRVGQISHSVVLGTFNVGEQGEGIVHDLTRVIGHVLNSIGNGGQSTVNGPNAVQTPSAQPGNETEGMRAGNQNPAGNQAPSGQTFHGPTFQSVSHVVQIPVAAGSIPLPSLNAPIPDSLNTLIEFMNRMEQTLTQNGYESNFSPANPGDQREELPSNQQGMPTLEALSTVLRRAERLLGGQTVAALSHIAGRLERERASADPRVRGQIQSESVQIGLAMQHLGALLLELGRTMLTLRMGQSSAESVVNNGPAVYISPSGPNPIMAQPFPLQASSLFGGSLPSSTPANLGTIGIGSAPRNVNIHIHAGTSIAPLVSAIGSRPNNGEGTRGEQHNEPGSGGSGSTRVLPVRNVIAATIPSHPPGVGVSSSTQTGFSVSTSQPPDSASLSSALAEINARLMNVVGSMQGDNTAPSGEMESISRDLSSGSESRPSTLNAQQDTVEMNGFGASSASLVGSTPESEVQKLQTEAVQTSSNAERDVLVDKFVSSSKQDLQSCSSGETIVKPEKDGDVSAVSDRQDVTEPAKSAPLGLGMGGLERKKRTRPQPPVSKVADDGSSSSSVDKSQQTRTDGQHILQTLASHGSALNSRNANGPSQRPLPSSDRPIDVAGLMSQALQSPALNGLLEGVSQQTGVDSPDGLRNMLQQFTQSPQLMNTVNQIVQQVGSQDVGNMFAGAERGQGGGIDISRMFQQMMPIVSQALGGANPSSLFSVEEAVPGAPYQDGTVNRRDGYSDNPSLQLDLQPLAERIEHLSPSVDIFGAVAENAVQLSGLGSASNDLLDELCHNESLAREYVDMLRYDVSKLLEGRSKPDKS 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00037 943 Gene3D - 13 108 - -
Viun8g00037 943 SUPERFAMILY Ubiquitin-like 19 99 IPR029071 -
Viun8g00037 943 MobiDBLite consensus disorder prediction 492 518 - -
Viun8g00037 943 MobiDBLite consensus disorder prediction 268 288 - -
Viun8g00037 943 MobiDBLite consensus disorder prediction 172 219 - -
Viun8g00037 943 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 942 - -
Viun8g00037 943 FunFam Large proline-rich protein BAG6 16 109 - -
Viun8g00037 943 SMART ubq_7 24 95 IPR000626 GO:0005515
Viun8g00037 943 MobiDBLite consensus disorder prediction 681 699 - -
Viun8g00037 943 MobiDBLite consensus disorder prediction 446 475 - -
Viun8g00037 943 Pfam Ubiquitin family 26 96 IPR000626 GO:0005515
Viun8g00037 943 MobiDBLite consensus disorder prediction 488 518 - -
Viun8g00037 943 MobiDBLite consensus disorder prediction 93 135 - -
Viun8g00037 943 PRINTS Ubiquitin signature 76 97 IPR019956 -
Viun8g00037 943 PRINTS Ubiquitin signature 55 75 IPR019956 -
Viun8g00037 943 MobiDBLite consensus disorder prediction 617 699 - -
Viun8g00037 943 CDD Ubl_ubiquitin_like 26 93 - -
Viun8g00037 943 MobiDBLite consensus disorder prediction 93 123 - -
Viun8g00037 943 MobiDBLite consensus disorder prediction 534 565 - -
Viun8g00037 943 MobiDBLite consensus disorder prediction 713 728 - -
Viun8g00037 943 ProSiteProfiles Ubiquitin domain profile. 24 99 IPR000626 GO:0005515
Viun8g00037 943 MobiDBLite consensus disorder prediction 451 475 - -
Viun8g00037 943 MobiDBLite consensus disorder prediction 713 735 - -
Viun8g00037 943 MobiDBLite consensus disorder prediction 617 631 - -
Viun8g00037 943 MobiDBLite consensus disorder prediction 578 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00037 Viun-Chr8 208897 221920 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00037 24 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 1.69e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00037 - - gmx:100783611 1501.11