Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00032 ATGCATACGCATATGCATAGATTCAGAGCAAGGGTTTTTCTGCGCTCAATTTCACTTTGTAAATCTAAGTGGCATCAACACCATGAGGCTCAAATTCACTTCTCTCAAAATCGCACCTCCAAAACAGGTCCTGAATTTGTTGGATTTGCAACAGAACCATCTATGCAGATGCAAGTGCTTAAGGCACTCTGCTCGGGTGAGAGAAAGAAGGCTTCAGACTTACTTTTGGGTTTTGGTTCCAGAACCCACTTATTAACAGCAGACGATTTTCTTCATATTTTTAAGTACTGTGCACGCTCTCCTGATCCATTGTTTGTAATGGAGATTTGGAGATTCATGGAATCAAAAGGTGTTAGCATGAACAATATATGTTCATCTCTTATGATGGAGGCCCTTTGTAAAGGAGGTTACTTGGAGGAGGCCTTTGATATCATGGATTTTCTCGGAGGAAGTCAATGTCTATATCCAGTTCTCCCACTTTACAATAGTCTCTTAGGATCCTGCACGAAAATGCAGAGTCTAATTCAAGCAAACAAATGTTTGGACTTAATGGAAAAGAAGATGGTAGGGAAGAGTGAAGTTACATATACCGAGCTTCTCAAGCTTGCAGTTTTGCTGAAAGACTTGCCAGCAGCCCATCTTGTTTGGCAGGAGTATATGAAAAACTATAGCATGAGTATCATTGCTCTGCGTAAATTCATTTGGTCATTTACAAGGTTAGGAGATTTAGAATCTGCTTATAAAACACTACAACAAATGGTGTCATTAGCCGTCAGGGGAAACTTTTCTATTGCTAAAACAGTTTATGGGAAGTTGTATTCTACTAGAATGGACATCCCTGTGCCTTCAAATAAGGGGCTAGACTTGACTCTATCAGACTTGAAGGAGATAAAAAAATTGGACTCTTGTACGAGTGCTGAATTGTCTGGGCTGAATGGAGAAGAACACTCACTACTTGTGAAGGTGTTGAGGTGGTCCTTTAATGACATAATACATGGGTGTGCAAACCAAAAGAATTATATTCTTGCAAGGAAGCTTATGTTACAGATGGAAAATCTTGGTTTGCAGCCATCCTGCCATACATATAATGGTATTATTAAAGCCGCTGTTTCTCATGGAAATTTTGGAGATGCCATAGGAGTGTTGAAAAAAATGCAGCAGAAGAATTTGAAGCCGAATGATTCAACTTTAGCAACACTTTCAATCACATGCAGCAAAGCACTACAGTTAGATTTAGCTGAGGCTTTTCTGAATCAGATTTCTGGATGTCTATATCCACATCCTTATAATGCTTTGCTAGCATCGTGCGATGAATTGAATCAACCTGAACGTGCTGTGCAAGTGTTTGCCAAGATGAAGCAGAAAAAAGTTTTGCCTAATATCAGGACTTGTGAGCTTCTATTCTCGTTATTTGGTGTTGTAAATGCCCCTTATGAAGACAGTGATATACTGTCACAGGTGGATGCTGCTAAAAGAATAAATGCTATAGAAAAAGATATGGTCACAAATGGCATTAAGCACAGTCATCTTTCAATAAAAAACATATTGAAAGCCCTTGGAGAAGAAGGGATGATAAGAGAGCTGATCCAGTATTTACACCTGGCAGAGAATCTTTTCATTTATCGAAGCCCTTCATTGGGAACACCTATGTACAACACAGTGTTACATTATCTTGTTGAAGCCAAAGAAAGTGACATGGCGATTGCAGTTTTCAAGAAGATGAAGTTATGTGGCTGCGACCCGGACTCTGAGACATACAATATAATGATTGACTGTTGTACCATCATACAAAGTTACAGTTCTGCTTGTTTGCTGATTTCAATGATGATACGGAAAGGGTTTTGTCCAGCGATATGTACATATACCGCTATCATTAAGGAGCCTTTCTGCAGATCGCTCCAAAGTTACATTCTCTATGCTCACAGTGCAGTATGCATTGTCTTTTTCATAACATTAGACATTGAACATCTTATGCTGGATGGAGTTTGA 1989 0.3922 MHTHMHRFRARVFLRSISLCKSKWHQHHEAQIHFSQNRTSKTGPEFVGFATEPSMQMQVLKALCSGERKKASDLLLGFGSRTHLLTADDFLHIFKYCARSPDPLFVMEIWRFMESKGVSMNNICSSLMMEALCKGGYLEEAFDIMDFLGGSQCLYPVLPLYNSLLGSCTKMQSLIQANKCLDLMEKKMVGKSEVTYTELLKLAVLLKDLPAAHLVWQEYMKNYSMSIIALRKFIWSFTRLGDLESAYKTLQQMVSLAVRGNFSIAKTVYGKLYSTRMDIPVPSNKGLDLTLSDLKEIKKLDSCTSAELSGLNGEEHSLLVKVLRWSFNDIIHGCANQKNYILARKLMLQMENLGLQPSCHTYNGIIKAAVSHGNFGDAIGVLKKMQQKNLKPNDSTLATLSITCSKALQLDLAEAFLNQISGCLYPHPYNALLASCDELNQPERAVQVFAKMKQKKVLPNIRTCELLFSLFGVVNAPYEDSDILSQVDAAKRINAIEKDMVTNGIKHSHLSIKNILKALGEEGMIRELIQYLHLAENLFIYRSPSLGTPMYNTVLHYLVEAKESDMAIAVFKKMKLCGCDPDSETYNIMIDCCTIIQSYSSACLLISMMIRKGFCPAICTYTAIIKEPFCRSLQSYILYAHSAVCIVFFITLDIEHLMLDGV 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00032 662 Gene3D Tetratricopeptide repeat domain 425 544 IPR011990 GO:0005515
Viun8g00032 662 Gene3D Tetratricopeptide repeat domain 60 279 IPR011990 GO:0005515
Viun8g00032 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 582 616 IPR002885 -
Viun8g00032 662 Gene3D Tetratricopeptide repeat domain 545 635 IPR011990 GO:0005515
Viun8g00032 662 Gene3D Tetratricopeptide repeat domain 318 424 IPR011990 GO:0005515
Viun8g00032 662 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 626 - -
Viun8g00032 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Viun8g00032 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Viun8g00032 662 Pfam PPR repeat 126 146 IPR002885 -
Viun8g00032 662 Pfam PPR repeat family 550 593 IPR002885 -
Viun8g00032 662 NCBIfam pentatricopeptide repeat 550 583 IPR002885 -
Viun8g00032 662 NCBIfam pentatricopeptide repeat 360 393 IPR002885 -
Viun8g00032 662 NCBIfam pentatricopeptide repeat 585 616 IPR002885 -
Viun8g00032 662 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 547 581 IPR002885 -
Viun8g00032 662 Pfam Pentatricopeptide repeat domain 346 393 IPR002885 -
Viun8g00032 662 Pfam Pentatricopeptide repeat domain 429 472 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00032 Viun-Chr8 183035 191175 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00032 326 630 Glycosyltransferase AT1G05670 20.303 2.23e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00032 - - vun:114194590 1253.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00032 8 183035 191175 Viun8g00032 8 183035 191175 ECH