Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00030 ATGTCGGCCAAGTTTCTGACCGTGGCGCCATTTGAGTGCGCCTGGAGAGAGGATTTGAAATTCCGGGAAGCAGGTCGAGGTTGTGTGGCCTTTGAAGCATTCGCCTGCAATGATGTTACCCTGGTTTTCCGGGAGAATGTGGGAAGCCAGGGTTACCATTATAAAAGAGATAGCAGTCCTCACTACACAATCATATTGGGGAGTCACAGGAATCGCCGACTCAGAATTGAGGTCAATGGAAAAGCTGTTGTCGATGTCGCAGGGGTTGGCCTTTGTTGCTCCTCCTCCTTTCAGAGTTACTGGATCAGCATCTACGATGGCTTGATTAGCATAGGCAATGGCAAATACCCTTTTCAGGATGTTGTTTTCCAGTGGTTAGATTCTTGTCCCAATTGTAATGTTCAGTATATTGGTCTCAGCAGCTGGGATAAACATGTTAAGTATAGAAATGTAAATGTTTTGTCCTTAACCCACACTCATATGCCCCTTTCGAAGCATGTTGTTTTTGGTGATTATCAAGTGGAGGATGAGCTTGATGCAGCAGACTCTTTCAATTACAAACACATGGATTATGACAAATGGGGGCTCAAAAATTTCCTTGAGAGTTGGGACTTGTCTGATGTGTTATTCATAGTTGGTGAAGAGCAGAAGCCCGTTCCTTCTCATAAGGCAATTTTAGCTGCATCTGGAAACTTTCCTGTGTGCTCCTCCTCATTTGTCATCAACATACCCACTGTACCGTATCCGCTTTTCCATGCACTGCTTCACTACATCTACGTGGGCTGGACCCAGATTCCACAGGAACAACTTTGTTCTTTGAGGGCTTTAAGCGTACAGTTTGAAGTGATGCCACTGGTGAAGCAGTGTGAAGAGACTATGGAACGCTTAAAGCTAGATAAGAAGTTGTTGGACACGGGAAAGAATGTGGAGCTAACCTATCCATCTATCCGACCTCATTGTTCAACTTTGCCCTCACTTCCTATCAACATTCATCAACTGAGACAATTGAAATTAACAGGCCAGTTCAGTGACGTAAGCATCTACATTGAGAGTTATGGGCTCATTGCACAAGCACATAAAATTGTTCTCAGCTTATGGAGTATCCCCTTTGCTCGGATGTTCACAAATGGAATGAGTGAAAGCGTGTCCTCGGAGGTTACTTTAAGGGATGTGCCACCAGAAGCTTTCAGGGCTATGCTCGACTGTTTATATGATGGGCAATTGCATGATAAAGTTATTGATTCTGGTGCTTTGTTGCTCCAACTCCTTTTATTAGCTGATCAATTTGGAGTGACTTTTCTTCAACAAGAATGCTGCAAAATGCTTTTAGAATGTCTCTCAGAGGACTCTGTATGTCCACTTGTCCAAGTGGTTTCATCAATCCCATCGTGCCGACTTATTAAAGAATCATTGCAGAGGAGAATTTCCATGAACTTTGACTATTATACCAGTGCAAGTACTGACTTTGTTTTGTTAGATGAGACAACATTAATCAATATCATTAAGCATCCGGATCTGACAGTAACATCTGAAGAGAAAGTTCTTAATGCAATTCTAATGTTTGGCATGAATTCTAAAGAGTTGTTTGGGTGGGAAGAGGTGGCTGAGTTAATAGTAAATTCGAAACCCGAACTCCTTTTTGGTGAGAGGCTTCAGTTAGTCCATGACTTGTTGCCGTTCGTGAGATTTCCACTGCTACAATATTCCTTACTTGAGAAGTTGCAGAATAGCAACATTGGTCAGCATATCCCTGTTTTCCAAAATCTTGTTAATGAGGCAATCAATTTTGTTAATTGTGGGCTGGCAGGGCTAGAAAATGAAGAGAATGTTCGATTCCAACATAGACGGTCCAGTTATAAGGAACTCCAGTATATTTGCGATGGGGATGACCACGGAGTTCTGTATTTTGCTGGCACATCCTATGGTGAACACCCTTGGGTTAATCCTCTTTTGGCAGAGCCCAGGAAAATTACCATAACAGCCAGCAGCCCCCACTCAAGATACACTGATCCCAAGGTTTTGGTCTCTAGAACCTACCAGGGAACATGTTTTGCCGGGCCCCGCTTGGAAAATGGGCAGAATTGTACCTGGTGGATGGTTGATCTTGGCCAAGATCATCAGCTTATGTGCAACTACTATACCCTAAGGCAGGACGGTTCCAAGGCCTTCCCCAGATGTTGGAACATTCAGGGCTCACAGGAGGGAAAGAGCTGGACGAATTTGAGGGTCCATGAAAATGATCGGAGCGTATGTAAACCGGGTCAGTTTGCCTCTTGGCCGATAGTTGGCCCCAACGCTCTGCTTCCTTTCAGGTATTTCCGGGTTGTTCTCACTGGACCCACCACCGATGCCACCAATCCCTGGAATTTCTGCATTTGTTACTTGGAACTCTATGGCTACTTCCTCTGA 2409 0.4421 MSAKFLTVAPFECAWREDLKFREAGRGCVAFEAFACNDVTLVFRENVGSQGYHYKRDSSPHYTIILGSHRNRRLRIEVNGKAVVDVAGVGLCCSSSFQSYWISIYDGLISIGNGKYPFQDVVFQWLDSCPNCNVQYIGLSSWDKHVKYRNVNVLSLTHTHMPLSKHVVFGDYQVEDELDAADSFNYKHMDYDKWGLKNFLESWDLSDVLFIVGEEQKPVPSHKAILAASGNFPVCSSSFVINIPTVPYPLFHALLHYIYVGWTQIPQEQLCSLRALSVQFEVMPLVKQCEETMERLKLDKKLLDTGKNVELTYPSIRPHCSTLPSLPINIHQLRQLKLTGQFSDVSIYIESYGLIAQAHKIVLSLWSIPFARMFTNGMSESVSSEVTLRDVPPEAFRAMLDCLYDGQLHDKVIDSGALLLQLLLLADQFGVTFLQQECCKMLLECLSEDSVCPLVQVVSSIPSCRLIKESLQRRISMNFDYYTSASTDFVLLDETTLINIIKHPDLTVTSEEKVLNAILMFGMNSKELFGWEEVAELIVNSKPELLFGERLQLVHDLLPFVRFPLLQYSLLEKLQNSNIGQHIPVFQNLVNEAINFVNCGLAGLENEENVRFQHRRSSYKELQYICDGDDHGVLYFAGTSYGEHPWVNPLLAEPRKITITASSPHSRYTDPKVLVSRTYQGTCFAGPRLENGQNCTWWMVDLGQDHQLMCNYYTLRQDGSKAFPRCWNIQGSQEGKSWTNLRVHENDRSVCKPGQFASWPIVGPNALLPFRYFRVVLTGPTTDATNPWNFCICYLELYGYFL 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00030 802 Gene3D Potassium Channel Kv1.1; Chain A 327 475 IPR011333 -
Viun8g00030 802 SMART BTB_4 343 446 IPR000210 GO:0005515
Viun8g00030 802 SMART BTB_4 206 297 IPR000210 GO:0005515
Viun8g00030 802 Pfam BTB/POZ domain 196 294 IPR000210 GO:0005515
Viun8g00030 802 Pfam BTB/POZ domain 334 444 IPR000210 GO:0005515
Viun8g00030 802 Pfam Farnesoic acid 0-methyl transferase 50 146 IPR022041 -
Viun8g00030 802 Pfam BTB And C-terminal Kelch 457 521 IPR011705 -
Viun8g00030 802 SMART BACK_2 452 575 IPR011705 -
Viun8g00030 802 Gene3D - 476 597 - -
Viun8g00030 802 CDD BTB_POZ_ZBTB_KLHL-like 205 280 - -
Viun8g00030 802 ProSiteProfiles BTB domain profile. 343 408 IPR000210 GO:0005515
Viun8g00030 802 PANTHER OS05G0345500 PROTEIN 3 802 - -
Viun8g00030 802 SUPERFAMILY POZ domain 331 443 IPR011333 -
Viun8g00030 802 Gene3D - 654 800 - -
Viun8g00030 802 Pfam F5/8 type C domain 659 784 IPR000421 -
Viun8g00030 802 CDD BTB_POZ_ZBTB_KLHL-like 342 409 - -
Viun8g00030 802 SUPERFAMILY POZ domain 194 294 IPR011333 -
Viun8g00030 802 Gene3D Potassium Channel Kv1.1; Chain A 194 310 IPR011333 -
Viun8g00030 802 SUPERFAMILY Galactose-binding domain-like 657 801 IPR008979 -
Viun8g00030 802 ProSiteProfiles BTB domain profile. 206 267 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00030 Viun-Chr8 174831 181583 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00030 - - gmx:100810794 1524.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00030 8 174831 181583 Viun8g00030 8 174831 181583 ECH