Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00027 ATGAGCTGCTTTTGTTCTGGAACTCGTCGGAAGGATGTGGGCCTTGAGAGCAGTTTACGGTCAAACTCAAAGACGAAGTCGAAGAGATCGTCTGCAACGAGTTACAGTTTTCGCGAGCTTGCAGCGGCGTCGAGGGGTTTTAACAAAGAGAACTTGATCGGGGAAGGGGGTTTCGGAAAGGTGTACAAGGGTCGTCTCTCTACAGGGCAGCTTGTGGCCATAAAACAATTACGTCTAGATGGTGAAACTCATCAGGGTAATCGGGAATTTGTGACGGAGGTTCTTATGCTCAGCCTCCTCCACCATTCCAATCTTGTCAAATTGCATGGCTACTGCACCCATGGGGATCAGAGGCTTTTGGTTTACGAATACATGCCCATGGGAAGCCTCGAGCAACATATCTCGGAGAAGAAAGCACTGAGCTGGAGAACTCGACTCATGATTGGCTTGGGCGCTGCGCGGGGCCTCCAGTATCTACACTGTGTAGCGAATCCTCCGGTTATCTATCGGGACCTGAAATCTGCCAACATCTTGCTAGACAGCAATTTGCACCCAAAACTCTCTGACTTTGGGCTTGCGAAGCTAGGACCCGTTGGAGACAATACCCATGTTTCCACCAGAGTGATGGGAACATACGGGTACTGCGCCCCCGAGTATGCCATGAGTGGCAAATTAACTCTTAAATCTGATATCTACTGCTTTGGCGTCGTCTTGCTCGAGTTGATCACCGGACGCAAGGCCATGGATGTCACTAGGAAACAACGGGAGCAAAGCCTGGTTGCATGGGCTCGCCCATATTTGAGCGACCGGAGAAAGGTTAATCAGATTGTTGACCCTCTTCTGGAAGGAAACTACCCCTTACGTTGTTTGCAGAATGCAGTTGCTATAACTGCAATGTGCCTCCAGGAGCAACCCAATCTCCGTCCCTCCATAAGTGACATTGTTGTTGCGTTGGAGTACCTGGCCTCCGAAAGTGTCTCTGAAGTCACCAGGCACCGTTCACGCAGCCCACCACGCCAATCACTCTCGATATCCGATACCCAAACAGACCCACACTAG 1059 0.5071 MSCFCSGTRRKDVGLESSLRSNSKTKSKRSSATSYSFRELAAASRGFNKENLIGEGGFGKVYKGRLSTGQLVAIKQLRLDGETHQGNREFVTEVLMLSLLHHSNLVKLHGYCTHGDQRLLVYEYMPMGSLEQHISEKKALSWRTRLMIGLGAARGLQYLHCVANPPVIYRDLKSANILLDSNLHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYCFGVVLLELITGRKAMDVTRKQREQSLVAWARPYLSDRRKVNQIVDPLLEGNYPLRCLQNAVAITAMCLQEQPNLRPSISDIVVALEYLASESVSEVTRHRSRSPPRQSLSISDTQTDPH 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00027 352 SUPERFAMILY Protein kinase-like (PK-like) 21 319 IPR011009 -
Viun8g00027 352 CDD STKc_IRAK 53 319 - -
Viun8g00027 352 FunFam Serine/threonine-protein kinase PBS1 125 336 - -
Viun8g00027 352 PANTHER OS07G0668900 PROTEIN 22 328 - -
Viun8g00027 352 SMART serkin_6 47 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00027 352 MobiDBLite consensus disorder prediction 329 352 - -
Viun8g00027 352 Pfam Protein kinase domain 47 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00027 352 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Viun8g00027 352 MobiDBLite consensus disorder prediction 336 352 - -
Viun8g00027 352 PIRSF ILK 11 336 - -
Viun8g00027 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Viun8g00027 352 Gene3D Transferase(Phosphotransferase) domain 1 125 340 - -
Viun8g00027 352 FunFam Serine/threonine-protein kinase CDL1-like 18 124 - -
Viun8g00027 352 ProSiteProfiles Protein kinase domain profile. 47 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun8g00027 352 Gene3D Phosphorylase Kinase; domain 1 10 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00027 Viun-Chr8 164506 167114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00027 11 345 Glycoside Hydrolase AT3G07070 55.882 3.70e-133 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Viun8g00027 Pkinase 2.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00027 - - gmx:100794722 543.117