Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00020 ATGGTTTCGCTTCATCCACTAGTGTGTCCTTTGTCAGTTTCCTCTTCCTCCTCTGACCTTTTTAGATGCTCCCTTTGGTCTAGCTGCTACCGGTCCGTAAGTTTTGCCCCGAAACGAAGAAATAGCTCCAAAACAGAGCAGCGTTCTCTCATCTGCAATGCTTCGTGGCAAGAGCTCGCCGGAGTTTTACTATTCTCAGCGATTCCTTTCACTGCCGTGAAAGCCATAGCTAATAGTCCGTTAGGAGAGTCGCTTCAGAGGAAAACGGAGGAGGAGAAGAAATCTGCTGAAAAAAACTCGTCTAAATTCAAGGCATTAGCCAACAAGGCCCGAAAGGAGAGCTGTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATATCATATGAATACCCATCATATCTTACTGGGGACTTGCCTGGGGATTATGGCTTTGACATTGCAGGGCTAGGCAAAGATCCTGTGGCGCTGCATAAATACTTCAATTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCTATCGGAGCTTTGATTCCAGAATTATTAGACCTATTGGGAGCCTTTCACTTTGTGGAACCTGTGTGGTGGCGTGTTGGTTATTCAAAGCTCAAGGGAGATACTTTGGATTACCTTGGCATCCAAGGTCTTCACTTTGCTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGGTTGGACCAGAATACGCTAGATATTGTGGGACTGAGGCATTGGAGCCCCTAGGAATATATCTGCCCGGTGATATAAATTATCCTGGAGGAGCTTTGTTTGATCCCTTGAATCTGTCCAACGATCCCGAAGCTTTTGAAGAGCTGAAGGTAAAAGAAATTAAAAATGGACGCTTGGCAATGGTGGCCTGGTTAGGCTTTTACGTGCAAGCAGCACTGACGGGTAAAGGTCCTGTTCAGAACCTTGTTGATCACATCTCTGATCCTTTCCACAACAACTTTCTGAACTCCCTCAACATTATGAAATTCGTCATATGA 1029 0.4597 MVSLHPLVCPLSVSSSSSDLFRCSLWSSCYRSVSFAPKRRNSSKTEQRSLICNASWQELAGVLLFSAIPFTAVKAIANSPLGESLQRKTEEEKKSAEKNSSKFKALANKARKESCWYGEDRPRWLGPISYEYPSYLTGDLPGDYGFDIAGLGKDPVALHKYFNFEILHARWAMLASIGALIPELLDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIAICQALLMVGPEYARYCGTEALEPLGIYLPGDINYPGGALFDPLNLSNDPEAFEELKVKEIKNGRLAMVAWLGFYVQAALTGKGPVQNLVDHISDPFHNNFLNSLNIMKFVI 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00020 342 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 94 333 IPR001344 GO:0009765|GO:0016020
Viun8g00020 342 Coils Coil 93 113 - -
Viun8g00020 342 MobiDBLite consensus disorder prediction 85 105 - -
Viun8g00020 342 MobiDBLite consensus disorder prediction 84 105 - -
Viun8g00020 342 Pfam Chlorophyll A-B binding protein 133 308 IPR022796 -
Viun8g00020 342 Gene3D Chlorophyll a/b binding protein domain 123 334 - -
Viun8g00020 342 SUPERFAMILY Chlorophyll a-b binding protein 114 334 - -
Viun8g00020 342 FunFam Chlorophyll a-b binding protein, chloroplastic 123 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00020 Viun-Chr8 97938 110527 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00020 38 336 Chloroplast and Mitochondria Gene Families AT1G76570 76.589 2.67e-175 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00020 K14172 - gmx:100786260 550.436