Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g04228 ATGGGATCGTGCGTCTCCATGGCGGGGGCGCCATCATCGTTGCCTTCGAAGGAAGCCGGTGATGATGAGCCGTGGAGTGCAACAGCATTGTCGGAATATAGGATTGAAATGAGGGTCCACAGAGTTCCTGGCAGATTCTTCTTGAACGCTTCATCGCAGATTGCTTCCCTCTACGGCAAACAAGGCTGCGGAGGGATCAACCAGGATGCAATGCTGGTTTGGGAAAACTTCTGTTCCAATGACGACACCGTTTTATGCGGTGTCTTCGATGGCCACGGACCTAATGGCCATTTGGTTGCAAAGAAACTGAGAGATTCCTTTCCGTTAAAGCTGATGGCACAGTGGAATCCCCCAAAGTCTGACACCGCCAACACCAATACCAATTTCTTTAGCACATCCATCAACGACTTGGAACCTTGTACCGTTGCCCCGACCGACATGGCCAAGCTCAGACAATCCTTTTTCAGAGCTTGCAAGGTGATGGACAGAGACCTCAAACTGCAGAACAAGATCGATTGTTCCTGTAGTGGCTCCACGGCTGTAATCTTGCTGAAGCAGGGCCACGACCTCCTTATTGCTAATGTGGGTGACTCCAGAGCTGTGTTGGCTACCCAAGACCGCAATGGTTCCCTCACCGCCGTTCAGTTGACCACTGACCTTAAGCCGGATCTTCCAAGGGAAGCAGAGAGGATAAGGATCTGTAAGGGAAGAGTGTTCGCCCTTAAAAATGAACCGGGGATTTATAGAGTATGGCTGCCCAATGTTAACTCCCCTGGCCTTGCCATGTCAAGGTCTTTTGGAGATTTTTGTCTCAAGGACTTCGGACTCATCTCTGTTCCAGAACTCTCCTATCACCGCCTCACTCACAGGGATCAATTTGTTGTGTTAGCCACAGATGGGGTATGGGATGTTTTATCAAACCAACAAGTTGTGTCCATTGTGTCATCTAGTCCACGCTCTTCGGCGGCTCGAATGCTGGTTGACGAAGCTGTTCAGGCATGGAAAACCAAGCTTCCCACTTCTAAGGTTGATGATTGCTCTGTAGTTTGTCTCTTCCTTGATTCCAACTCCGACTTAACACGATCAACTACCAACAACGACCGATCAAATGTCGTTGAGCTGTAA 1125 0.4951 MGSCVSMAGAPSSLPSKEAGDDEPWSATALSEYRIEMRVHRVPGRFFLNASSQIASLYGKQGCGGINQDAMLVWENFCSNDDTVLCGVFDGHGPNGHLVAKKLRDSFPLKLMAQWNPPKSDTANTNTNFFSTSINDLEPCTVAPTDMAKLRQSFFRACKVMDRDLKLQNKIDCSCSGSTAVILLKQGHDLLIANVGDSRAVLATQDRNGSLTAVQLTTDLKPDLPREAERIRICKGRVFALKNEPGIYRVWLPNVNSPGLAMSRSFGDFCLKDFGLISVPELSYHRLTHRDQFVVLATDGVWDVLSNQQVVSIVSSSPRSSAARMLVDEAVQAWKTKLPTSKVDDCSVVCLFLDSNSDLTRSTTNNDRSNVVEL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g04228 374 PANTHER PROTEIN PHOSPHATASE 54 351 IPR015655 GO:0004722|GO:0006470
Viun7g04228 374 ProSiteProfiles PPM-type phosphatase domain profile. 51 353 IPR001932 -
Viun7g04228 374 Gene3D - 49 355 IPR036457 -
Viun7g04228 374 CDD PP2Cc 67 353 IPR001932 -
Viun7g04228 374 Pfam Protein phosphatase 2C 126 331 IPR001932 -
Viun7g04228 374 SUPERFAMILY PP2C-like 53 355 IPR036457 -
Viun7g04228 374 MobiDBLite consensus disorder prediction 1 23 - -
Viun7g04228 374 SMART PP2C_4 45 351 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g04228 Viun-Chr7 40705589 40707481 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g04228 39 357 PP2C-type Phosphatase Gene Family AT1G16220 55.422 2.09e-134 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g04228 - - gmx:100816114 489.189