Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g04221 ATGTATCCCTCTTCCTCCTCCTCTTCCTCTTCTTCCTCCTCCTCTCACTCCATGAGCCACGCGCCGACAGGCCTCACGCGCTACGGCTCCGCGCCGGGCTCTCTCCTCACCACCACCGTCGATGCTCTCATCGGAGGATCACGCCCCACCCCCACCCCTTACTATTCCGGAGGAGACTCTTCCGACTCCACCTGCAAAGACCAAACATCGTATCACAACCACGCCCTCGGATCCGCCTTGCTCCGCCAGAAAAGCTCTCCCGCCGGCTTCCTCTCCCACCTCGCCTCCACAGCCACCGCCCCCACCGCCAATCACAACCATAATGGAGCGGGATTCACAATCACGCGGGGCTCTCGGTTGAAGTCCCAGCTGAGCTTCACCGGTCACTGCCAGGAATCTCTCTGCGGCGGCGATAACACTAACAATGTGGTGCTCGGCGATCATGCCACCTTCGGAATGGAGCCTTGGGACAGTTCTCATTCTCATTCTAATTCCATCGCGTTTTCCGCTCCCCCGACTAAGCGCTCCAAAAGCTCCAACTCCAGCGATCAAGACATTCTCCATTGCCTCAACGCCTTGGAATCTCAGTTTAGCCTTCCACAGACCACTCTCGAGATGGCAACGGTCGAGAAGCTCTTGCACATTCCTGAAGATTCCGTCCCTTGTAAAATCCGTGCTAAGCGAGGCTGTGCCACTCATCCCCGCAGCATTGCCGAACGGGAGAGAAGAACCAGAATAAGTGGAAAGCTCAAGAAATTGCAGGATCTTGTACCTAATATGGATAAGCAAACAAGCTATGCAGACATGCTCGATTTGGCCGTTCAGCATATTAAAGGTCTTCAAACACAGGTTCAGAAGCTTCACAAAGAACTTGAGAATTGCACTTGCGGATGCACACAAAGCAAATAA 909 0.5435 MYPSSSSSSSSSSSSHSMSHAPTGLTRYGSAPGSLLTTTVDALIGGSRPTPTPYYSGGDSSDSTCKDQTSYHNHALGSALLRQKSSPAGFLSHLASTATAPTANHNHNGAGFTITRGSRLKSQLSFTGHCQESLCGGDNTNNVVLGDHATFGMEPWDSSHSHSNSIAFSAPPTKRSKSSNSSDQDILHCLNALESQFSLPQTTLEMATVEKLLHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQTQVQKLHKELENCTCGCTQSK 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g04221 302 MobiDBLite consensus disorder prediction 53 68 - -
Viun7g04221 302 MobiDBLite consensus disorder prediction 1 68 - -
Viun7g04221 302 FunFam Transcription factor bHLH130 family 231 300 - -
Viun7g04221 302 Pfam Helix-loop-helix DNA-binding domain 235 281 IPR011598 GO:0046983
Viun7g04221 302 MobiDBLite consensus disorder prediction 1 45 - -
Viun7g04221 302 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 233 296 IPR036638 GO:0046983
Viun7g04221 302 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 34 292 - -
Viun7g04221 302 SMART finulus 236 286 IPR011598 GO:0046983
Viun7g04221 302 MobiDBLite consensus disorder prediction 161 182 - -
Viun7g04221 302 CDD bHLH_AtbHLH_like 235 287 IPR045239 -
Viun7g04221 302 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 280 IPR011598 GO:0046983
Viun7g04221 302 Gene3D - 231 300 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g04221 Viun-Chr7 40625989 40630596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g04221 80 300 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 55.745 8.69e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun7g04221 HLH 4.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g04221 - - vra:106771988 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g04221 7 40625989 40630596 Viun7g04221 7 40625989 40630596 ECH
Viun1g01802 1 29787150 29790140 Viun7g04221 7 40625989 40630596 ECH
Viun7g00368 7 2599049 2602247 Viun7g04221 7 40625989 40630596 ECH