Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g04213 ATGACGAACAGAAACAGGGAAGGTTATTCAGATTGCAGCGAGATCAATTTTGCTGCAGCATTTGGCGCCATGCAAGAAGACAATAACGCAGCAGGGGCGTTGGTTCAGAAGTTCAAAGGCGTGGTGCCTCAACAAAACGGGAACTGGGGTGCACAGATATATGCAAACCACCAGAGAATCTGGTTGGGGACTTTCAAATCCGAAAGAGAGGCTGCAATGGCTTATGACAGCGCCAGCATAAAACTCAGAAGCGGAGACAGCCACAGAAACTTTCCATGGAACGATCAAACGGTGCAGGAGCCTCAGTTTCAGAGCCATTACAGCACAGCAAGAATGCTGAGCATGATCAGAGATGGCACCTACCCATCACACTTTGCCACATTTCTGAGAACTCGTGAAACCCAACAAGGTGGTGTTCCGAAGCACGTAACTTTGAAGGGTCACGGCACGGAGCAGCTTTGCTGCACCCAGCTTTTTCAGAAGGAGTTGACACCAAGCGACGTGGGGAAGCTCAACAGGCTTGTCATCCCGAAAAAACATGCAGTCACCTATTTTCCTAACGTGTGTGACGGTGGTGCAGAATCGCATGAAGAAAATGGGAGTGTTGTTGACGTTGAGGTTGCGTTTTATGACAGGCTCATGAGATTGTGGAAATTCCGATACTGCTACTGGAAGAGCAGCCAGAGTTACGTGTTCACAAGAGGGTGGAATCGGTTTGTGAAGGACAAAAAACTGAAGGCTAAGGATACCATTGCGTTTTTCATGTGTGAACCTGTGGATTGCAGAACGGGAGAGGGAAGAGAAGCTTTTGGATTGATTGATGTAATCTATAATTCAGAGGAGAGAGGTTTTGGAGACATGATTTGCAGTGAGGAAGATGAAGAGACCAAAGATGAAAACACCGAAAAGGGTTTGAGACTCTTCGGTGTTTTTATCAAATAG 942 0.4692 MTNRNREGYSDCSEINFAAAFGAMQEDNNAAGALVQKFKGVVPQQNGNWGAQIYANHQRIWLGTFKSEREAAMAYDSASIKLRSGDSHRNFPWNDQTVQEPQFQSHYSTARMLSMIRDGTYPSHFATFLRTRETQQGGVPKHVTLKGHGTEQLCCTQLFQKELTPSDVGKLNRLVIPKKHAVTYFPNVCDGGAESHEENGSVVDVEVAFYDRLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIAFFMCEPVDCRTGEGREAFGLIDVIYNSEERGFGDMICSEEDEETKDENTEKGLRLFGVFIK 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g04213 313 ProSiteProfiles B3 DNA-binding domain profile. 159 276 IPR003340 GO:0003677
Viun7g04213 313 SUPERFAMILY DNA-binding pseudobarrel domain 157 257 IPR015300 -
Viun7g04213 313 CDD B3_DNA 158 255 IPR003340 GO:0003677
Viun7g04213 313 SMART rav1_2 37 98 IPR001471 GO:0003700|GO:0006355
Viun7g04213 313 Gene3D - 155 268 IPR015300 -
Viun7g04213 313 Pfam AP2 domain 37 83 IPR001471 GO:0003700|GO:0006355
Viun7g04213 313 Gene3D AP2/ERF domain 36 93 IPR036955 GO:0003700|GO:0006355
Viun7g04213 313 CDD AP2 36 94 IPR001471 GO:0003700|GO:0006355
Viun7g04213 313 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 36 310 IPR044800 GO:0003700
Viun7g04213 313 Pfam B3 DNA binding domain 159 254 IPR003340 GO:0003677
Viun7g04213 313 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Viun7g04213 313 ProSiteProfiles AP2/ERF domain profile. 37 92 IPR001471 GO:0003700|GO:0006355
Viun7g04213 313 FunFam AP2 domain-containing protein RAP2.8 36 93 - -
Viun7g04213 313 SMART B3_2 159 264 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g04213 Viun-Chr7 40561239 40562180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g04213 37 313 RAV Transcription Factor Family AT1G50680 54.487 1.23e-102 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun7g04213 B3 1.1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g04213 K09287 - gmx:102660503 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g04213 7 40561239 40562180 Viun7g04213 7 40561239 40562180 ECH