Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g04203 ATGAATGACACAGGCAATTTCCAACTTGTAGATGAGAATTCACAGATGTTGTGGGACAGTTTCAGCAATCCAACTGATACCTTGGTGCCAACTCAAATCATGGAGGTTAAAGGCACACTTTCGTCACGCCAGAGAGAGACCAACTACACACGAGGAAGGTTCCAATTTCGCTTGCTTCCGGATGGTAATGCTGTACTTAATCCCATAAATTTGCCTACAAACCGTACTTATGAGGCTCACTATATCAGTAACACTTATGATCCCAACAATACAACAAACTGCGGTTTCCGAGTGATGTTTGATAATTCAGGATTTTATGTATTGAAGAGGAGCTATGAGAAGGTTTATATTACCAATCAAAATGATATGCTCTCAATTGATTCCTATTACTATAGAGCAACCATGAATTTTGATGGAACTTTCACCATATCCCGTTACCCCAAAAGTGGAGCTTCAAATCCAAGCTGGTCAGTTATAAAGACATTGCCAGATGACATTTGCATGGATTTGAAAGCAATCACGGCTGGTAGTGGGGTCTGTGGATTCAATAGTATCTGCACTCTGGAAGCTGATCAAAGACCTAAGTGCACTTGCCCCGAAGGTTATTCTCTTCTTGATTCAACTGATGAGTACGGCAGCTGTAGACCGAATTTGGAACTAGGTTGTGGAGGAAGTGGACAAAGCTTGCAAGAAGATATGTACTTCATGAAGGAAATGGTGAATACAGATTGGCCTGAATCAGATTTTGAGTTGTATCTACATTACAACTCAGAAGACTGCAAGAATTCTTGCTTGCAAGATTGCTTATGTGCTGTTTCTATTTTTAGAGATGATAGCTGCTGGAAGAAGAAACTGCCTCTCTCAAATGGAAGACGGGGTGGACGAGTTCAGGCATCTGCTTTCATTAAGTTGAGGGAAAATGATGCCGTGTCAGATACTCCTTCAAATTCATTCATAGAAGAGAAGGAAAATGAAAAAGATCAAGACACTTTGGTAACTGTGATAGCAGTCCTTCTAGGAGGTTCTGTCTTTTTGAATCTCATGGTGATCAGTGCAGTATGTATTGGCTTCCACTTCTACTACAAGAGAAGTTCTACAAATAATACTGTTGCAGAAACCAATTTGCGCAGTTTCAGCTTTAGAGAGCTTGTGCAGGCAACAGATAACTTCAGAGAAGAATTGGGAAGGGGGTCGTGTGGAATTGTCTTTAAAGGAAAAACGGATTTGGCTACTATTGCTGTCAAAAAACTGGACAAGTTGCTCAAAGACAGCGATAAGGAATTCAAAACAGAAGTGAATGTAATTGGCCAAACTCATCACAAAAACTTGGTTCGCCTGATTGGATATTGTGATGAGCTAGAAAACCGGATTCTGGTGTATGAGTTCATGAGCAATGGCAGTTTGGCAAATTTCCTATTCAGAGATTTCAAGCCTAACTGGAACCAAAGAGTCCAGATTGCCTTTGGGATATCAAGAGGGCTGGTTTACTTGCACGAGGAATGCTTCACCCAGATCATCCACTGTGACATAAAGCCTCAAAATATACTTCTTGATGAGCATTACAATGCAAGAATATCAGATTTTGGGTTGTCAAAGCTACTAATGATTAATCAAAGCCGCACAGAAACTGACGTTCGAGGAACAAAAGGGTATGTTGCACCAGACTGGTTCAGGAGTGCGCCAATCACAACCAAGGTTGATGTCTACAGTTTTGGTGTGCTGCTTCTGGAGATCATTTGCTGCAGGAGAAATGTAGATGATAAGTTTGAGATCGATGAGAAAAGCATTTTAACTGACTGGGCTTATGACTGCTATAGGAATGGAAGAATAGACATTCTGGTTGAAAATGACGATGAGGCTATCAATGACATAAATAAGTTGGAAAGGTTTGTGATGGTAGCTATTTGGTGCCTTCAAGAGGATCCCTCTCTCAGGCCAACAATGAAGAAGGTGATGCTTATGCTGGAAGGAATAGCTCCTGTCACAATTCCACCAAGTCCCTGCCCTTATGCCTCTGTTACTGTTAGTTGTGGTTGA 2037 0.4119 MNDTGNFQLVDENSQMLWDSFSNPTDTLVPTQIMEVKGTLSSRQRETNYTRGRFQFRLLPDGNAVLNPINLPTNRTYEAHYISNTYDPNNTTNCGFRVMFDNSGFYVLKRSYEKVYITNQNDMLSIDSYYYRATMNFDGTFTISRYPKSGASNPSWSVIKTLPDDICMDLKAITAGSGVCGFNSICTLEADQRPKCTCPEGYSLLDSTDEYGSCRPNLELGCGGSGQSLQEDMYFMKEMVNTDWPESDFELYLHYNSEDCKNSCLQDCLCAVSIFRDDSCWKKKLPLSNGRRGGRVQASAFIKLRENDAVSDTPSNSFIEEKENEKDQDTLVTVIAVLLGGSVFLNLMVISAVCIGFHFYYKRSSTNNTVAETNLRSFSFRELVQATDNFREELGRGSCGIVFKGKTDLATIAVKKLDKLLKDSDKEFKTEVNVIGQTHHKNLVRLIGYCDELENRILVYEFMSNGSLANFLFRDFKPNWNQRVQIAFGISRGLVYLHEECFTQIIHCDIKPQNILLDEHYNARISDFGLSKLLMINQSRTETDVRGTKGYVAPDWFRSAPITTKVDVYSFGVLLLEIICCRRNVDDKFEIDEKSILTDWAYDCYRNGRIDILVENDDEAINDINKLERFVMVAIWCLQEDPSLRPTMKKVMLMLEGIAPVTIPPSPCPYASVTVSCG 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g04203 678 SMART serkin_6 388 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g04203 678 FunFam Serine/threonine-protein kinase 25 170 - -
Viun7g04203 678 SUPERFAMILY alpha-D-mannose-specific plant lectins 1 67 IPR036426 -
Viun7g04203 678 Gene3D Phosphorylase Kinase; domain 1 359 462 - -
Viun7g04203 678 ProSiteProfiles Protein kinase domain profile. 388 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g04203 678 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 463 662 - -
Viun7g04203 678 CDD STKc_IRAK 394 658 - -
Viun7g04203 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 505 517 IPR008271 GO:0004672|GO:0006468
Viun7g04203 678 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 668 - -
Viun7g04203 678 SUPERFAMILY Protein kinase-like (PK-like) 368 656 IPR011009 -
Viun7g04203 678 Pfam Protein kinase domain 391 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun7g04203 678 FunFam S-receptor-like serine/threonine-protein kinase 360 462 - -
Viun7g04203 678 Gene3D - 24 151 IPR036426 -
Viun7g04203 678 Gene3D Transferase(Phosphotransferase) domain 1 463 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g04203 Viun-Chr7 40532762 40535843 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g04203 370 657 Receptor kinase-like Gene Family AT1G60800 41.892 9.12e-69 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Viun7g04203 Pkinase 3.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g04203 - - vra:106771503 1291.56