Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g04156 ATGGCATCAACTTCTGGCGTTGGTAACAGCTCAATACCCATCAAAGATGTAGCTTCGAACTTTCGTGCATATCCTCTTCCTCTAGCAAAATATGAGGAAGTTGTAGACAATTCCCAGCTCTTCATGTTTACCTTGGAGAAGCTTCACGCATCTATGGGTACCAAATACATGATTCCTACTGTTGGAGGAAGAGAACTAGATTTGCATCGTCTCTTCGTTGAAGTGACTTCCCGTGGAGGGATTGCAAAAATAATTAGAGAGAGGAAATGGAAAGACGTAACTTCAGTCTTCAATTTTCCATCAACAGCTACAAATGCTTCTTTTGTCTTGAGGAAGTACTATGCTTCACTGCTCTACCACTACGAACAAATCTACTATTTTAAATCCCGGGAATGGGACCCTACTGCTCCTGATGTTTTGCAGAACCAATCAACCCTGGCAGTTCCTCCTCCAAAAATTCAGTTCCCACAGTCTTTGCCAGAAATTCAACCAGCTGTTTTTCAACAGTCAAATGTTAATGCTGCTAAATTGCCTGAAGCAATGGCAACATCTTCGGCTGGATCTCCAGTCATCGGGGTCATTGACGGGAAATTTGAAAGTGGCTATCTAGTTACTGTCACGATTGGTTCAGAGAAACTCAAAGGAGTGCTTTATCAAGCTCCACAGAATCCTATAATGCATGGGTCCCATGGTGCCGCAGCTAATAATACCAACGCTTCTGCTTCGGTGGGTGTTCATCGTCGGAGACGCAGGAAGAAATCAGAAATAAAAAGAAGAGATCCTGCTCATCCAAAACCTAACAGAAGTGGGTACAATTTCTTCTTTGCTGAACAGCATGCAAGACTAAAGGCACTTCACCATGGAAAAGACAGAGAGATTAGTAGGATGATTGGTGAACTTTGGAACAAGTTAAAAGAATCAGAAAAGACGGTTTATCAAGAGAAGGCCATGAAAGATAAAGAGAGGTACAGAGCAGAAATGGAGGATTACAGAGAGAAACTGAAGATGGGTCAAGTTATCAGTGACGCCGTGCCCCTTCAGCAACGACTTCCTGAAGGAGATGCAGACATGTTAGATGTTGACTTAAAAACGGATGAAGCTGAGGCAGATTCGCTTCAAACTCCAGAGGAGAGTAGTTCCGGTGGTAGTGATTATGAAGATTATAATAAAACTGCAGAAAGAGGTTTTGATATGGATTCATTACCTGTAATAGGAATGGGTGCAGAAACAAGCTATTTGGGTTCGGAAGATAAGTCATCCAAAGGAGGTTTATGA 1275 0.4235 MASTSGVGNSSIPIKDVASNFRAYPLPLAKYEEVVDNSQLFMFTLEKLHASMGTKYMIPTVGGRELDLHRLFVEVTSRGGIAKIIRERKWKDVTSVFNFPSTATNASFVLRKYYASLLYHYEQIYYFKSREWDPTAPDVLQNQSTLAVPPPKIQFPQSLPEIQPAVFQQSNVNAAKLPEAMATSSAGSPVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPQNPIMHGSHGAAANNTNASASVGVHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKALHHGKDREISRMIGELWNKLKESEKTVYQEKAMKDKERYRAEMEDYREKLKMGQVISDAVPLQQRLPEGDADMLDVDLKTDEAEADSLQTPEESSSGGSDYEDYNKTAERGFDMDSLPVIGMGAETSYLGSEDKSSKGGL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g04156 424 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 264 331 IPR009071 -
Viun7g04156 424 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 16 378 - -
Viun7g04156 424 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Viun7g04156 424 SUPERFAMILY ARID-like 35 134 IPR036431 GO:0003677
Viun7g04156 424 Gene3D - 27 136 IPR036431 GO:0003677
Viun7g04156 424 CDD HMG-box_AtHMGB9-like 264 330 - -
Viun7g04156 424 MobiDBLite consensus disorder prediction 229 243 - -
Viun7g04156 424 SMART bright_3 36 127 IPR001606 GO:0003677
Viun7g04156 424 MobiDBLite consensus disorder prediction 365 401 - -
Viun7g04156 424 MobiDBLite consensus disorder prediction 244 258 - -
Viun7g04156 424 SMART hmgende2 263 332 IPR009071 -
Viun7g04156 424 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Viun7g04156 424 SMART ARID_2 32 122 - -
Viun7g04156 424 Gene3D High mobility group box domain 248 342 IPR036910 -
Viun7g04156 424 MobiDBLite consensus disorder prediction 229 271 - -
Viun7g04156 424 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Viun7g04156 424 Coils Coil 313 333 - -
Viun7g04156 424 Pfam HMG (high mobility group) box 264 331 IPR009071 -
Viun7g04156 424 FunFam High mobility group B protein 15 29 142 - -
Viun7g04156 424 PRINTS High mobility group (HMG1/HMG2) protein signature 315 335 - -
Viun7g04156 424 PRINTS High mobility group (HMG1/HMG2) protein signature 296 315 - -
Viun7g04156 424 FunFam High mobility group B protein 15 246 341 - -
Viun7g04156 424 SUPERFAMILY HMG-box 252 335 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g04156 Viun-Chr7 40314564 40318987 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g04156 1 362 ARID Transcription Factor Family AT1G04880 61.333 1.86e-135 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Viun7g04156 ARID 2.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g04156 - - gmx:100783284 744.191