Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g04153 ATGGGAGCATGTTCAGTGAAGGGAGTGATTGATGGGAAGTTTGAAAGTGGGTACATAGTTACAGTGAGAATGGGTTCGGAGACACTGAAGGGTATACTTTACGAAGTGGCATTGGGTGTGCATGAGAGTAAGAAATCAGAGAGAAAAAAGAGAGTTGCTGTTCATCCAAAACATAGCAGAAGTGGGTACAATTTCTTCTTTGCTCAACAGCATGCAACACTGAAGCCACTTCACCCAGGAAAAGAGGGAGAGATTCCTAGGATCATCGCTGAACTCTGGTCAAACTTAAAAGTATCCCAAAAGATGATTTATCAAGAGATGGCGAAGAAGGATAAAGAAAGGTACAAAGTAGAAATGGAGGATTATTTGGAGAAACTGAAAATGGGTCCAGTCATCACTGATGCTGTGCCACTTCGACAATGGCCTCCCAAACTGGATGAAGTTGAAGCAAACAAAGGCAATTCAAGTAGAGAAAACGTTAATAAAGCTGCAGATAGAGTTTTTGATATGAATGCAATGCCTCAAATGATGGAGATTGAAACAAACTATATGGGTTCAAAAGAAAACTCACTTGAGGAGGGTTTATGA 588 0.4065 MGACSVKGVIDGKFESGYIVTVRMGSETLKGILYEVALGVHESKKSERKKRVAVHPKHSRSGYNFFFAQQHATLKPLHPGKEGEIPRIIAELWSNLKVSQKMIYQEMAKKDKERYKVEMEDYLEKLKMGPVITDAVPLRQWPPKLDEVEANKGNSSRENVNKAADRVFDMNAMPQMMEIETNYMGSKENSLEEGL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g04153 195 CDD HMG-box_AtHMGB9-like 56 122 - -
Viun7g04153 195 Coils Coil 105 125 - -
Viun7g04153 195 SMART hmgende2 55 124 IPR009071 -
Viun7g04153 195 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 56 123 IPR009071 -
Viun7g04153 195 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 5 161 - -
Viun7g04153 195 Gene3D High mobility group box domain 39 130 IPR036910 -
Viun7g04153 195 SUPERFAMILY HMG-box 55 125 IPR036910 -
Viun7g04153 195 Pfam HMG (high mobility group) box 56 122 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g04153 Viun-Chr7 40304122 40305882 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g04153 1 151 ARID Transcription Factor Family AT1G04880 46.277 2.96e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Viun7g04153 HMG_box 2.9e-13 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g04153 - - vra:106770743 298.901