Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g04130 ATGCCACTTCGAGCTCGCACTGTAACTGCAAGCTTGCGGCGGTCTCTTCATTGTCTCCACCATAGCTTTTGTTCTTTGTCTCTATCAAAACCTCAGTTTTCTGCCAATTGCCATGAATTTTTGCCATGGTTGGAGCGGAAAGCTGATTCTGCAGTTTCTTCCTCACTTTTCATCGGGAAATCTTCGTATGGAAGGTCTCTGTTTGCTTCCAAGACAATACAAACTGGAGATTGCATTTTAAAGGTTCCTTACAGAGTGCAAATAACTGCTGATAATCTCCCTCCCGAAATCAAATCTTTGATTGGCGAGGAAGTGGGAAATATTGCGAAACTTGCTATTGTTATTCTCATTGAGAAGAAATTGGGTCAGGGTTCTGAATGGTATCCTTATATCAGCTGTCTTCCACAGCAAAGGGAGCAGCACAATACGGTATTTTGGAATGAAAGTGAGTTGGAGATGATTCGTCCAAGTTCAGTTTATCAAGAAACTATTGACCATAAGTCTCAAATTGAAAAGGACTTTCTGACAATCAAGCGTGTTTTTGAATCTTTCCATCTAAGTTTTGAAGATTTTACCTTCAAGGACTTCATGCATGCATGCACACTAGTTGGTTCTCGAGCATGGGGAAGCACAAAGGGTTTAGCTCTGATTCCATTTGCAGATTTCTTAAACCATGATGGACTTTCAGAAGCAATTGTAATGAGTGATGATGACAAACAATGCTCAGAAATTATTGCTGATCGTGACTATGCCCCTGGTGAACAGGTTAAGATCCAGATTGATGTACCTAAGCATGACCCTTTGCATGACATGAAGTTAGAACTCTTGCATCGAAACATTGTACCTCATCCTGAAGATATGGAGGACTTGACATGTCCCGTGAATACCTTCAGTATCAAGGAGGTGAAGTCGGATAGAGGAAAAGGGAAGGGTCTTCCACAGTCACTTCGTGCGCTTGCTCGTGTTCTTTCTTGTACCACATCTCAGGAACTTAACGATTTGGTCGAGGAAGCTGCTCAAAATGATGGCAGGCTGGCTAGGCGTCCTTTAAAGGATATCAGCAAAGAGATACAAGCACACTTGATGTTGTTATCGGTATTCATCCAATTAATTGAGGAGCGCAATGCGATTATTATGTCACTGGGTTCTTGTCGTAGCCCTCCCTTGTGTGAAAGACTTTCTGTTAGAAGAACAATGGCTCAAGATCTCCTAAACGGTGAGCTTCGCATTCTCAAATCTGTTTCTGCCTGGCTGGAGAACTACTGTGTCTCCTTGACTTCATAG 1284 0.4237 MPLRARTVTASLRRSLHCLHHSFCSLSLSKPQFSANCHEFLPWLERKADSAVSSSLFIGKSSYGRSLFASKTIQTGDCILKVPYRVQITADNLPPEIKSLIGEEVGNIAKLAIVILIEKKLGQGSEWYPYISCLPQQREQHNTVFWNESELEMIRPSSVYQETIDHKSQIEKDFLTIKRVFESFHLSFEDFTFKDFMHACTLVGSRAWGSTKGLALIPFADFLNHDGLSEAIVMSDDDKQCSEIIADRDYAPGEQVKIQIDVPKHDPLHDMKLELLHRNIVPHPEDMEDLTCPVNTFSIKEVKSDRGKGKGLPQSLRALARVLSCTTSQELNDLVEEAAQNDGRLARRPLKDISKEIQAHLMLLSVFIQLIEERNAIIMSLGSCRSPPLCERLSVRRTMAQDLLNGELRILKSVSAWLENYCVSLTS 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g04130 427 SUPERFAMILY SET domain 37 260 IPR046341 -
Viun7g04130 427 Gene3D - 256 422 IPR036464 -
Viun7g04130 427 Pfam SET domain 64 256 IPR001214 GO:0005515
Viun7g04130 427 Pfam Rubisco LSMT substrate-binding 264 380 IPR015353 -
Viun7g04130 427 Gene3D set domain protein methyltransferase, domain 1 35 255 - -
Viun7g04130 427 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 20 361 - -
Viun7g04130 427 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 33 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g04130 Viun-Chr7 40205441 40211726 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Viun7g04130 SET 7.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g04130 K19199 - gmx:100818002 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g04130 7 40205441 40211726 Viun7g04130 7 40205441 40211726 ECH